PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0046.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 494aa    MW: 54324.7 Da    PI: 4.9122
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-18131184356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k
  Sphfalx0023s0046.1.p 131 KKRRLTFEQVRSLERNFELENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 184
                           5668999**********************************************9 PP
2HD-ZIP_I/II118.82.9e-38131222293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrl+ eqv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye L + y +lk+e e+  +e+e+L++e
  Sphfalx0023s0046.1.p 131 KKRRLTFEQVRSLERNFELENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYELLSSDYSRLKAEFEATVQEKERLKSE 219
                           9***************************************************************************************9 PP

           HD-ZIP_I/II  91 lke 93 
                           +++
  Sphfalx0023s0046.1.p 220 VQR 222
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.3E-19115188IPR009057Homeodomain-like
PROSITE profilePS5007117.54126186IPR001356Homeobox domain
SMARTSM003895.0E-15129190IPR001356Homeobox domain
CDDcd000862.60E-16131187No hitNo description
PfamPF000461.5E-15131184IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-19132193IPR009057Homeodomain-like
PRINTSPR000311.1E-5157166IPR000047Helix-turn-helix motif
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5166182IPR000047Helix-turn-helix motif
PfamPF021833.5E-14186226IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MKTIQFRAEI AATNAMQRAT GFGAQNATLA QKETFPADST FVAMLASCSN MYQLQVPGGV  60
VGGSLEDAVV GCGQKRPSSF LYPTSFDTPP AAAAVAGEED QAGDVDQDGS DEYYCSGGHN  120
NNNNNAVESS KKRRLTFEQV RSLERNFELE NKLEPERKMQ LAKELGLQPR QVAVWFQNRR  180
ARWKTKQLER DYELLSSDYS RLKAEFEATV QEKERLKSEV QRLSGKNELL FPPRSCVDAG  240
VDQPSHPSGS RSPADQTTSN DHHHAQHVNS GLPSIKLEKD RLQLLSDQQH LVEPDSRLLH  300
SQIWRPSSPS CTAVDPTATT SAQKGDQTSQ QEEEEQSTSA ADSNSSNSSE ILNTDSPRTA  360
VHRYKVLSSG IIAANLEQQL QKSTCNDVAI CCPRPTLTPD GNFLQQQQDH LPPGGDSCLR  420
ALVSCSGDDD DLGAATASPQ VLHQQRPSTS PYHVINLEAD GNSYQTDDHP SCNYFLSQLD  480
EKAAMQPWWL DWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178186RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-38homeobox 1