PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0023s0122.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

TCP

Protein Properties

Length: 547aa MW: 55465.7 Da PI: 7.4372

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0023s0122.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.8	3.4e-33	90	325	2	128
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+ +tgt Sphfalx0023s0122.1.p 90 PPKRSSTKDRHTKVDGRGRRIRMPASCAARIFQLTRELGHKSDGETIEWLLQQAEPAIITATGTgtvpalapsisgslrsssgmaaaas 178 789*************************************************************8888877777777777777777777 PP TCP 66 ....................................................................ssssasec.....eaesssss 81 + + + ++++++ Sphfalx0023s0122.1.p 179 raaglhgalaltgpagaavaaeaemrmqdqvrrggsewasaeervmdatrameasrrmsmghgessmqE------MmagfqQ-QQQQQQ 260 777777777777777666666666666666666666665555555555555544444444443222210......1122211.111111 PP TCP 82 asnsssg.....................kaaksaakskksqksaasalnlakesr......................akarararertr 127 +++++++ r ra+ar++ + Sphfalx0023s0122.1.p 261 QQQQQQQqhdqgmvsagsevgegldtgdG-------------------------RlrkrtrasslgggrlkeenepsRPVRATARQSMQ 324 11111111223344444444444444330.........................03333333333333333333333333333333222 PP TCP 128 e 128 + Sphfalx0023s0122.1.p 325 Q 325 2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-31	95	270	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.325	96	150	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MASMGGGQGI GGGGSSRQQV DTTALGMAGM GQEQYGAEGQ GGGGGLGGGM GSMTIPQQQQ 60 QQQQQEAMAA GGSGAAGDSA APAAPVKKQP PKRSSTKDRH TKVDGRGRRI RMPASCAARI 120 FQLTRELGHK SDGETIEWLL QQAEPAIITA TGTGTVPALA PSISGSLRSS SGMAAAASRA 180 AGLHGALALT GPAGAAVAAE AEMRMQDQVR RGGSEWASAE ERVMDATRAM EASRRMSMGH 240 GESSMQEMMA GFQQQQQQQQ QQQQQQQQHD QGMVSAGSEV GEGLDTGDGR LRKRTRASSL 300 GGGRLKEENE PSRPVRATAR QSMQQQQQQQ QQQQQQAQQV GLGASSNMMP AAMWAVAPAV 360 AGVPSSGAMP AIWMLPVSAG ASTAGVMAGP GAEQQQIWTF PPSGSYRMAA GPGPGPSIQL 420 GTVGGPGGPG GGPGSGNVQP SSSSAMMASV IPGGVTLMPG FNLQGGVGLE LQGGHMGHHM 480 PLGSMLLQQA GSPQQMPTGL GLGGEGHLGM LAALNAYSRG LNPDQHQSMS SGHQQGDSGD 540 DPTSSQ*

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MASMGGGQGI GGGGSSRQQV DTTALGMAGM GQEQYGAEGQ GGGGGLGGGM GSMTIPQQQQ  60
QQQQQEAMAA GGSGAAGDSA APAAPVKKQP PKRSSTKDRH TKVDGRGRRI RMPASCAARI  120
FQLTRELGHK SDGETIEWLL QQAEPAIITA TGTGTVPALA PSISGSLRSS SGMAAAASRA  180
AGLHGALALT GPAGAAVAAE AEMRMQDQVR RGGSEWASAE ERVMDATRAM EASRRMSMGH  240
GESSMQEMMA GFQQQQQQQQ QQQQQQQQHD QGMVSAGSEV GEGLDTGDGR LRKRTRASSL  300
GGGRLKEENE PSRPVRATAR QSMQQQQQQQ QQQQQQAQQV GLGASSNMMP AAMWAVAPAV  360
AGVPSSGAMP AIWMLPVSAG ASTAGVMAGP GAEQQQIWTF PPSGSYRMAA GPGPGPSIQL  420
GTVGGPGGPG GGPGSGNVQP SSSSAMMASV IPGGVTLMPG FNLQGGVGLE LQGGHMGHHM  480
PLGSMLLQQA GSPQQMPTGL GLGGEGHLGM LAALNAYSRG LNPDQHQSMS SGHQQGDSGD  540
DPTSSQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024387677.1	1e-140	transcription factor TCP22-like
TrEMBL	A0A2K1JZ10	1e-138	A0A2K1JZ10_PHYPA; Uncharacterized protein
STRING	PP1S348_6V6.1	1e-139	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	7e-36	TCP family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0023s0122.1.p