PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0024s0006.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

DBB

Protein Properties

Length: 408aa MW: 44156.3 Da PI: 6.1723

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0024s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.9	7.7e-07	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ + + ++ C ++ lC+dC + +H+ H++vp Sphfalx0024s0006.1.p 4 QCDSCAKSVASVICCADEAALCADCDSRIHSAnklvskHQRVP 46 6****99*******************6688999999887 PP
2	zf-B_box	31.3	4.1e-10	53	95	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++++C+ ++ek + +fC +++ llC +C l++H+ H+ Sphfalx0024s0006.1.p 53 SPPRCDICQEKLAFFFCLEDRALLCCNCDLSIHNAnaltgkHR 95 679******************************7677777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.968	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.66E-6	3	46	No hit	No description
SMART	SM00336	2.5E-9	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.57	52	99	IPR000315	B-box-type zinc finger
SMART	SM00336	3.7E-16	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.8E-8	53	95	IPR000315	B-box-type zinc finger
CDD	cd00021	2.02E-9	55	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MRIQCDSCAK SVASVICCAD EAALCADCDS RIHSANKLVS KHQRVPFLPD PNSPPRCDIC 60 QEKLAFFFCL EDRALLCCNC DLSIHNANAL TGKHRRFLIP GTRVSLGAVP AVEDKCTTTE 120 QPLTPEAEEA EAASYTYPAA KPSLSFSETL SPSLKSGERL LLPPSTCSLH KPNNSEGKTT 180 TITTAMMKPE AATLSRLSSS SFLPPASNNL ITPRRFLQTS GGSAASCCIT TTNTHTSSMP 240 SSFHMEQQHQ QSSGLMHCKS SSITEFLTDA IPGWQVEELL LNLPELTTTG GGYTICDGGG 300 STNKAEALSL EELDWMMPHC TLQGNQQVFV DAVREVPQLP PLPQTPVLPE PVMMPWLGRV 360 VNSGSLKVKG NQEAILPVET FLDAFVVPDL GTQQQQSSQF LKRRRNF*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MRIQCDSCAK SVASVICCAD EAALCADCDS RIHSANKLVS KHQRVPFLPD PNSPPRCDIC  60
QEKLAFFFCL EDRALLCCNC DLSIHNANAL TGKHRRFLIP GTRVSLGAVP AVEDKCTTTE  120
QPLTPEAEEA EAASYTYPAA KPSLSFSETL SPSLKSGERL LLPPSTCSLH KPNNSEGKTT  180
TITTAMMKPE AATLSRLSSS SFLPPASNNL ITPRRFLQTS GGSAASCCIT TTNTHTSSMP  240
SSFHMEQQHQ QSSGLMHCKS SSITEFLTDA IPGWQVEELL LNLPELTTTG GGYTICDGGG  300
STNKAEALSL EELDWMMPHC TLQGNQQVFV DAVREVPQLP PLPQTPVLPE PVMMPWLGRV  360
VNSGSLKVKG NQEAILPVET FLDAFVVPDL GTQQQQSSQF LKRRRNF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.2	4e-29	DBB family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0024s0006.1.p