PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0024s0013.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GATA

Protein Properties

Length: 643aa MW: 70658.3 Da PI: 6.6033

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0024s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	39.9	6e-13	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C+ ++TplWR+gp ++ LCnaCG ++r kg+ Sphfalx0024s0013.1.p 7 CCHCNISTTPLWRNGPPEKPVLCNACGSRWRTKGT 41 99************88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	4.8E-7	1	53	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.47E-9	5	44	No hit	No description
CDD	cd00202	1.18E-12	6	41	No hit	No description
Pfam	PF00320	6.9E-11	7	41	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	10.712	7	40	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.2E-10	7	41	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Pfam	PF13919	4.2E-6	294	377	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MGKQGPCCHC NISTTPLWRN GPPEKPVLCN ACGSRWRTKG TLLNYMPMHS GGFGGAGGHK 60 WSGETKCARG RKGAQKQSSE AWSHKRKEPC GPHKSSTSLK WNESITSEIQ SSSESLSLTT 120 DSQVWGSFSE GTVPTKKRTL LSRAHAPLEK VVRHLLELLY EPPASNPFTT SCVSSEALLV 180 EYNPPFADFE VGLGSIFLNR PPTSSHHEPG RETNSVWYES LEEGPEPFNA LNQVAETRIS 240 GPLTQLPNGG AKNLLDGGKE KVKQITRKLE GESHLLMDRN ITHNKSLLEN FPYNKRDILQ 300 SCQSPLLFLE MKDIVNFETF TGLLTEEEQT WLMKFLSSVD LGRFQDSLKE MFNSTQFEGV 360 FANFQQLLSE GMFDSAELGL NPRILQHFQQ LLNLTDLSGS GWLERCSQLQ HRIKRRGKSA 420 DLSKAAQIKE SSKENMNEVP AASMGSAGFK HSPSWLPSHT WGVTEEDLTS HTGSEKHKGL 480 SGNHSPLSTE GALVYGGFGL RKHPHCMKMD THDSNHAGET CFLGNGLLLA DRSRCGGGSI 540 SVDDIPDIQV PGSYGSESDL LFHIPSNMMS FQQAELLQQP TCKEEINSNQ VENGSLIISN 600 TWHMDSGPSD WGSLFYNPSC AGEVSCTTLP NGTVLNPGHN LL*

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MGKQGPCCHC NISTTPLWRN GPPEKPVLCN ACGSRWRTKG TLLNYMPMHS GGFGGAGGHK  60
WSGETKCARG RKGAQKQSSE AWSHKRKEPC GPHKSSTSLK WNESITSEIQ SSSESLSLTT  120
DSQVWGSFSE GTVPTKKRTL LSRAHAPLEK VVRHLLELLY EPPASNPFTT SCVSSEALLV  180
EYNPPFADFE VGLGSIFLNR PPTSSHHEPG RETNSVWYES LEEGPEPFNA LNQVAETRIS  240
GPLTQLPNGG AKNLLDGGKE KVKQITRKLE GESHLLMDRN ITHNKSLLEN FPYNKRDILQ  300
SCQSPLLFLE MKDIVNFETF TGLLTEEEQT WLMKFLSSVD LGRFQDSLKE MFNSTQFEGV  360
FANFQQLLSE GMFDSAELGL NPRILQHFQQ LLNLTDLSGS GWLERCSQLQ HRIKRRGKSA  420
DLSKAAQIKE SSKENMNEVP AASMGSAGFK HSPSWLPSHT WGVTEEDLTS HTGSEKHKGL  480
SGNHSPLSTE GALVYGGFGL RKHPHCMKMD THDSNHAGET CFLGNGLLLA DRSRCGGGSI  540
SVDDIPDIQV PGSYGSESDL LFHIPSNMMS FQQAELLQQP TCKEEINSNQ VENGSLIISN  600
TWHMDSGPSD WGSLFYNPSC AGEVSCTTLP NGTVLNPGHN LL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47140.1	9e-26	GATA transcription factor 27

Link Out ? help Back to Top
Phytozome	Sphfalx0024s0013.1.p