PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0024s0064.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 479aa    MW: 53251.4 Da    PI: 5.832
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0024s0064.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.8e-1063128155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.....kr..krfs..lgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  ++ ++     k+  k f+   g ++ +e Aa+a++ a++k++g
  Sphfalx0024s0064.1.p  63 SIYRGVTRHRWTGRFEAHLWDkSCWnDKqnkkgKQeeKLFHetAGAYDDEEAAARAYDLAALKYWG 128
                           57*******************9999722555764489999966899******************98 PP
2AP248.91.6e-15171222155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa+a++ a+ +++g
  Sphfalx0024s0064.1.p 171 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYSTQEEAAAAYDVAAIQYRG 222
                           89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1263137IPR016177DNA-binding domain
PfamPF008471.5E-863128IPR001471AP2/ERF domain
SMARTSM003805.6E-1764142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1064136IPR001471AP2/ERF domain
PROSITE profilePS5103216.9564136IPR001471AP2/ERF domain
PRINTSPR003673.4E-66576IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17171232IPR016177DNA-binding domain
PfamPF008473.7E-11171222IPR001471AP2/ERF domain
CDDcd000185.08E-15171232No hitNo description
SMARTSM003801.1E-26172236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18172231IPR001471AP2/ERF domain
PROSITE profilePS5103218.413172230IPR001471AP2/ERF domain
PRINTSPR003673.4E-6212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MVKVCKRSPT VTTCAKRDTN GGSECGTPSE KTSMLRTRKK SSRNLKEAQK GQLPSIASTG  60
RSSIYRGVTR HRWTGRFEAH LWDKSCWNDK QNKKGKQEEK LFHETAGAYD DEEAAARAYD  120
LAALKYWGPG TLLNFKISEY EKEINEMRNM SREEYLATLR RRSSGFSRGV SKYRGVARHH  180
HNGRWEARIG RVLGNKYLYL GTYSTQEEAA AAYDVAAIQY RGSAAVTNFE LSHYTEMQRL  240
GELETSSCMG NNLTAFPEQE SNSMPYPNMS ISSAGYVSVC SPVSEESVAS YQVASNLSSE  300
PTSILNYTPL DSWPLVPTYI SRRLDQLPSY ALQSTQHSCC ANPVAEAIFS EADVSKAAVT  360
VGIPEAQSVI TKQFLDEQTA ENEVTNTSIT AEKGEAISAT SMLESCNGLL ANHDYQHGSE  420
IWMPDDFASF DTNPCLLPDF DPADVWVGME MEHEDVFLES IIPKSYPSLY PFPIRACS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602898.12e-96AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLK7MUQ84e-95K7MUQ8_SOYBN; Uncharacterized protein
STRINGGLYMA18G49101.17e-96(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-63AP2 family protein