PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0024s0130.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 555aa    MW: 61462.6 Da    PI: 6.8558
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0024s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.9e-52471831128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                           lppGfrFhPtdeelv +yL +kve++ +++++        vi+evd+yk++Pw+Lp k+  +e+ewyfFs+rd+ky++g r+nra++sg
  Sphfalx0024s0130.1.p  47 LPPGFRFHPTDEELVLHYLWRKVESDIHQVFTifsprcrdVIAEVDLYKFDPWELPGKAIFGEREWYFFSPRDRKYPKGVRPNRAAASG 135
                           79**********************99955554555666659***************7766799************************** PP

                   NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           yWkatg+dk+++++ + +++g+kktLvfy+grapkg+kt+W+mheyrl
  Sphfalx0024s0130.1.p 136 YWKATGTDKPIYTNmGVRQIGVKKTLVFYEGRAPKGTKTNWIMHEYRL 183
                           ************9978889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-6242216IPR003441NAC domain
PROSITE profilePS5100559.58547216IPR003441NAC domain
PfamPF023651.0E-2748183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MVMIIGSTSG SSKEEHDQGL LQIRSPCAVV QALSLQARLP AGNTQRLPPG FRFHPTDEEL  60
VLHYLWRKVE SDIHQVFTIF SPRCRDVIAE VDLYKFDPWE LPGKAIFGER EWYFFSPRDR  120
KYPKGVRPNR AAASGYWKAT GTDKPIYTNM GVRQIGVKKT LVFYEGRAPK GTKTNWIMHE  180
YRLVEGVCSV PNNVLQQQLD SSLRLDNWVL CRIYCKKSTV AAAAQRAARP ADQISDAAAR  240
IEEVLAALPE PDKTGKSLFV PSCRVGVRGA HHYYSSGLLH GNQEAAGDQE HVRLVGSLLQ  300
ATDSSNIATP AETSATSHMI MSTIHETADQ AAALPDFKRS ILSSFKRMEN EQRCLEASNI  360
IVGNHDPSKL QDITGKETIS SSFPKILTNL EDRLQQAPQE LPSSLIGSGS SCSKNLTKNP  420
TTHDSRISLI TPDLDLPTIL PPADNLKSEK PAGHHYSFLS PFSNLGSCID PSKLDEEMDP  480
LLPRAAVAGH SSSPPPRFCT LDDERHPEYS IPSSLPTRYD PVEDECRLEY SIPFPWLLME  540
QCAATDPSSS AMRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-654721920171NAC domain-containing protein 19
3swm_B5e-654721920171NAC domain-containing protein 19
3swm_C5e-654721920171NAC domain-containing protein 19
3swm_D5e-654721920171NAC domain-containing protein 19
3swp_A5e-654721920171NAC domain-containing protein 19
3swp_B5e-654721920171NAC domain-containing protein 19
3swp_C5e-654721920171NAC domain-containing protein 19
3swp_D5e-654721920171NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.18e-68NAC domain containing protein 25