PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0024s0140.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 387aa    MW: 43381.9 Da    PI: 6.2041
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0024s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.77.1e-14104192276
              trihelix   2 WtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                           W+ +e laL  a+re+ er ++++              +++ +W ++ +++++ g++rs++qC +kwe +++ +kk+ +++k  +s ss
  Sphfalx0024s0140.1.p 104 WSLEEMLALQVAKREDRERHGSNSnshhnrnlkatpvaAAQERWNWIEDYCWALGVQRSAQQCHDKWEGISTAFKKVYNHDKLFSSSSS 192
                           *********9999988888887655778888888999899**************************************99998765555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-6103184No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDSLVDSHQN LYYRATVVSS LESGGSADND EGEEEGRHHE HQNQLQDHDP HLSETRSGRR  60
SRGDAHFMDD NNGYSLISID EGETVLFGLP QGARMGRMYR KSSWSLEEML ALQVAKREDR  120
ERHGSNSNSH HNRNLKATPV AAAQERWNWI EDYCWALGVQ RSAQQCHDKW EGISTAFKKV  180
YNHDKLFSSS SSSAAAAAAS SEVHKKSSSS SYWQMSGEER KKHKLPANFP RELFMALMEW  240
QTGKSSRSSV DPGELVVDTS TPVPIADLTE SDDESDDDIS GPNRTMGKRR KLGGPKIEAT  300
LANILEHNSQ TVVEAMMELE ERQDKRHRED LELEKRKLAM EKENFSHMMK LSTGYISALN  360
SIGDGLKQLS TVLTGNAHSL HFPQAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403989.11e-102uncharacterized protein LOC112296082
RefseqXP_024403990.11e-102uncharacterized protein LOC112296082
RefseqXP_024403992.11e-102uncharacterized protein LOC112296082
RefseqXP_024403993.11e-102uncharacterized protein LOC112296082
RefseqXP_024403994.11e-102uncharacterized protein LOC112296082
RefseqXP_024403995.11e-102uncharacterized protein LOC112296082
TrEMBLA0A2K1IYA71e-101A0A2K1IYA7_PHYPA; Uncharacterized protein
STRINGPP1S20_334V6.41e-102(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.12e-16Trihelix family protein