PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0025s0145.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 414aa    MW: 45950.6 Da    PI: 10.0773
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0025s0145.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31330388259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D y+WrKYGqK++kgs++pr+YY+C+s  +Cp++k+vers +d +++++tYegeH h+
  Sphfalx0025s0145.1.p 330 SDDYSWRKYGQKPIKGSPHPRGYYKCSSMrNCPARKHVERSLDDSSMLIVTYEGEHSHP 388
                           69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.3E-17278327IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-32317389IPR003657WRKY domain
PROSITE profilePS5081129.757324390IPR003657WRKY domain
SuperFamilySSF1182907.19E-27327389IPR003657WRKY domain
SMARTSM007742.9E-38329389IPR003657WRKY domain
PfamPF031065.3E-27331388IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MVEVMEYSSL GKRDRGMSSY EAQEAARMGI DSARRLLQML SHQHQGQQQQ QQQQQQCLQE  60
AGGHGKERMM SAADAERCKF QKVQASTLCS SRTSCTGHAR FRRATAARTN PMIAGFEYVF  120
FQSANFAQED ELKRKQLSKE QLKEKEIRNV KFLEEVPSEV VFAAPPPPHE YRHTQQQIQQ  180
QQHLHPQLQL QIQQQMEKQN HRSSSSSSMS MSLENSMSSG AAGGGGGGHH RPPLHSTTNK  240
SFSIANMQQD QNAGNQAAAG WLLLPQAVAA VHTAAGKKKS CSSKPDENGG GHSCTSERLG  300
RCHCSKRRKL RVRRTIRVPA ISNKLADIPS DDYSWRKYGQ KPIKGSPHPR GYYKCSSMRN  360
CPARKHVERS LDDSSMLIVT YEGEHSHPRS STIPPPSIST ALNNCAVITT TTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20317387271WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.16e-41WRKY DNA-binding protein 15