PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0027s0007.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 340aa    MW: 36197.7 Da    PI: 7.1194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0027s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-08187227954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sphfalx0027s0007.1.p 187 ARHRRERISDRIRMLQRLVPGG-----TKMDTASMLDEAIHYVKFL 227
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13179236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-10180232No hitNo description
SuperFamilySSF474596.15E-14182237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5188227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMKKSYKHSL GEEELDQPAD VVLPLQQLEE LAGVTNSQCG VLLRKLSSQG GGEYCGRESL  60
LQKPVSSSSS SMVDSNSEMA AEGDNSGSGF CSLSSSSGEP PAGVIGQLQL AVAVSNEACD  120
DRKPNVDQGV LVMPGDQMMR AMLLFRSAAV GAAAVGGARE IETSGMTRPI KTRRNMRISK  180
DPQSVAARHR RERISDRIRM LQRLVPGGTK MDTASMLDEA IHYVKFLKLQ LQALEQLGNN  240
FDPNFTVGMP AFHPISHHPP AAAAAAAHHH HAVLRSLDVN CSAYQVAAAA AASSPSMANA  300
SHSSSDPSSG SHHITGHHWP RTSSSSLCFP DHPQEQFCH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-23bHLH family protein