PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0027s0007.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 269aa    MW: 28576.1 Da    PI: 7.4823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0027s0007.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08116156954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sphfalx0027s0007.2.p 116 ARHRRERISDRIRMLQRLVPGG-----TKMDTASMLDEAIHYVKFL 156
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-14108165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.66E-11109161No hitNo description
SuperFamilySSF474594.06E-14111166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-6117156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVDSNSEMAA EGDNSGSGFC SLSSSSGEPP AGVIGQLQLA VAVSNEACDD RKPNVDQGVL  60
VMPGDQMMRA MLLFRSAAVG AAAVGGAREI ETSGMTRPIK TRRNMRISKD PQSVAARHRR  120
ERISDRIRML QRLVPGGTKM DTASMLDEAI HYVKFLKLQL QALEQLGNNF DPNFTVGMPA  180
FHPISHHPPA AAAAAAHHHH AVLRSLDVNC SAYQVAAAAA ASSPSMANAS HSSSDPSSGS  240
HHITGHHWPR TSSSSLCFPD HPQEQFCH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-23bHLH family protein