PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0028s0061.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 222aa    MW: 24895.9 Da    PI: 9.4953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0028s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-12131173247
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaai 47 
                            y+GVr ++  ++Wv eIr       ++++++lg++ ++eeAa+a++
  Sphfalx0028s0061.1.p 131 VYRGVRHRSELNKWVTEIRP----TaHKRKIWLGTYKSPEEAARAYD 173
                           59***************999....2235******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.6E-14131194IPR001471AP2/ERF domain
PROSITE profilePS5103215.198131188IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-13131190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-20131190IPR001471AP2/ERF domain
PfamPF008473.2E-8131173IPR001471AP2/ERF domain
CDDcd000188.60E-16132190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MPHSMLGYQG RVKKAENLPS SKLLLLERNT DDGFAGANFL SLGTGTSSPP PPPPPPPAGR  60
VHKDLENHEI DLNSPPVDQY ERETKGESST TYSTTLEEEE EESNSNNNNR RSGTGLGRGR  120
LQQQFSEEVL VYRGVRHRSE LNKWVTEIRP TAHKRKIWLG TYKSPEEAAR AYDVGIHYTG  180
KKIPLNFPES VKNLPELPRG LSWEELAPFV KKQALTAAKR AR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359180.11e-49dehydration-responsive element-binding protein 1F-like
TrEMBLA0A144LHE88e-54A0A144LHE8_9BRYO; Dehydration-responsive element-binding protein 5-8
STRINGPP1S373_18V6.14e-49(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.14e-17ERF family protein