PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0028s0189.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 621aa    MW: 67569 Da    PI: 5.8776
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0028s0189.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.3e-1750100256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           +y+GVr+++ +gr++AeIrdp++   + r +lg+f+tae+Aa a++ a+++++g+
  Sphfalx0028s0189.1.p  50 RYRGVRRRP-WGRYAAEIRDPNT---KERKWLGTFDTAEDAAIAYDWAARSMRGA 100
                           69*******.**********933...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.73350107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-2950106IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2050107IPR016177DNA-binding domain
PfamPF008471.9E-105099IPR001471AP2/ERF domain
SMARTSM003803.1E-3250113IPR001471AP2/ERF domain
CDDcd000184.06E-2850106No hitNo description
PRINTSPR003675.0E-95162IPR001471AP2/ERF domain
PRINTSPR003675.0E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MVGRIDAFAQ RQLLPQQSHC EPGLAVTRGS SMRKGGLETK KGRRSREPGR YRGVRRRPWG  60
RYAAEIRDPN TKERKWLGTF DTAEDAAIAY DWAARSMRGA KARTNFVYPT HHTCIMSTTL  120
ATDRNSRAAG DDHSYRDQHH QLQQLSGSEA PNNNFCAVNV GAPASKPRKE DWTNTGFHDS  180
QTSSRSDAYE SIYQSVEKLA QAISDIGPAT RPRPASSSSL LLPHTDPRGQ DSINGACMRE  240
EGNESVVGRK QWLQSEYTYE CSLYESASRA PKSNLTPPIL QVQIPDFCEE PPGGSCAGLL  300
SPPCNSTMAP LSHGAAALSH QSSLSVPLTT SSEVPPHVRK YSEEVDTLAQ VIAQSSVDFN  360
RPMITAGKPP QQQQHEQIPP ASHRNCMVST QVSYSEDTTP SLPADSLSTP DSPGLFSLSS  420
EAESYGPSPT AAEVSSPLCS SGSGIVTSPS RNPDNLQSIL PANLSCPAVE RWSQPQSRDW  480
SWGEPAAAAV QIPQVLQTAC TLAAAWQCSN SPMEEVKCEP ASSSAASWQT LCALPAAAAA  540
WAQTPRASCE LVGTRKDDWQ DYNIKRAEQQ QQFSGLLGDL VGESFTTNDT LYMESIPFPE  600
HPLDDCHLFP FLLDECRIFV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-20471061171Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13957KKGRRSREPGRYRGVRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-14ERF family protein