PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0028s0190.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family DBB
Protein Properties Length: 257aa    MW: 28376.6 Da    PI: 6.1602
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0028s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-06433534
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                           C+ +e  +++lfC  ++  lC++C ++ H
  Sphfalx0028s0190.1.p  4 LCDVCEVAPAHLFCAADEAALCHKCDEKVH 33
                          7**************************999 PP
2zf-B_box21.45.2e-075492438
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                          + C+ +e+  + +fC  +++ lC +C +  H g    H+
  Sphfalx0028s0190.1.p 54 PLCDICENASAFFFCGIDGTSLCLQCDMDVHIGgkktHE 92
                          78**************************99944555675 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.1E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.324147IPR000315B-box-type zinc finger
CDDcd000212.25E-6344No hitNo description
PfamPF006431.6E-5344IPR000315B-box-type zinc finger
SMARTSM003361.7E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501198.7315196IPR000315B-box-type zinc finger
CDDcd000215.62E-65493No hitNo description
PfamPF006438.8E-65492IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRTLCDVCEV APAHLFCAAD EAALCHKCDE KVHACNQLAS RHVRIELAET RAVPLCDICE  60
NASAFFFCGI DGTSLCLQCD MDVHIGGKKT HERYLLMAQR VEIPVQKPGQ DDNIPDDKQP  120
ENLDGTNNHL NGLQKNGQNH IHHHHHHHHH HHHEQENKNE RASPKLGADL ISIGPAGAIA  180
VGVEVLQLHA ERQPTSQMFD LNSQPQRLQS QASHPDKDED GDKEPVSRDN DCSDAVECMT  240
AKEVQQSGKI HKTGEA*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381275.13e-74B-box zinc finger protein 18-like
SwissprotC0SVM55e-52BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A176WPN75e-73A0A176WPN7_MARPO; Uncharacterized protein
TrEMBLA0A2R6X9X25e-73A0A2R6X9X2_MARPO; Uncharacterized protein
STRINGPP1S207_121V6.11e-73(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.17e-54DBB family protein