PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0030s0065.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family SRS
Protein Properties Length: 539aa    MW: 56383.7 Da    PI: 6.8875
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0030s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702204.23.6e-633264943154
                DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstk 90 
                           +g+++Cq+CGnqakkdC+++RCRtCCksrgfdC+th+kstWvpaakrrerq++++aa++ a+a   + ++skr r++    +   s t+
  Sphfalx0030s0065.1.p 326 TGSSACQECGNQAKKDCSYRRCRTCCKSRGFDCTTHLKSTWVPAAKRRERQAAESAAAAAASAGLlRPKSSKRARNTL-VGNVVNSLTT 413
                           67899*********************************************9998887766665555777788888762.2333333333 PP

                DUF702  91 lssaeskkeletss.................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           +s ++++  ++ +s                 lP+ev+++a+f+cvr+ +v+dge+e+aYq++v+igGh+fkG+LydqG+++
  Sphfalx0030s0065.1.p 414 TSATSPRGGSDLNSahltsthpsqptsakggLPPEVRAQALFKCVRLMGVEDGENEFAYQATVKIGGHIFKGVLYDQGVDN 494
                           334444444444445566788899999999************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.6E-58328493IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.7E-26331372IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.5E-25445492IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MVHPSRIITY HLRPHPWWGA SGTRRLYATE WERNGKRLGE SRSSETGGGG GGSDPRDDPT  60
ALKEGDLSLG YAYARTTLPP AALTNAIPWG RAPVYGTHHH HHHREIYHNI LSSRGVEDSD  120
GGVGDYGAAA ATHGAPSPHG VRGHGSSAHV VHHVGGSLQQ HGAAGYESRE VLRTQDTALA  180
AVNFDEEEEE EAEEGSSNSG SGGVGKQQGT ARNNHPSSLG QQGWPLSVRQ QQQHQEEEEE  240
EGEEDVATTT TQGMNVPSLQ QHNPSHGVVV APPEPDNHLH LHEQRAEELW GGGAGGVKGN  300
EIVVQQQIGG GAGGGAPVAG ALTTGTGSSA CQECGNQAKK DCSYRRCRTC CKSRGFDCTT  360
HLKSTWVPAA KRRERQAAES AAAAAASAGL LRPKSSKRAR NTLVGNVVNS LTTTSATSPR  420
GGSDLNSAHL TSTHPSQPTS AKGGLPPEVR AQALFKCVRL MGVEDGENEF AYQATVKIGG  480
HIFKGVLYDQ GVDNGQPAAQ SLGELQLGGS RGGMPSSSAL IDPASLYVSG SALLGALR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-43Lateral root primordium (LRP) protein-related