PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0031s0012.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HRT-like

Protein Properties

Length: 570aa MW: 61512.7 Da PI: 10.6526

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0031s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	38.9	1.5e-12	365	393	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CG+ l++G +C++ P kgRKRC HK+ + Sphfalx0031s0012.1.p 365 CGFVLDNGVPCSAIPSKGRKRCTMHKDTK 393 **************************966 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MGLVSMSFNP SDDAVGAKAM SNHAGCSGHD TAPRWKREDY VHVKHDKLFS DWKVLVGPSD 60 WRDHAAGKEG VQRYRVQNLP GSHCGPGVYE LGVTGPAWLP VQQDQAGLGS NKLRSKEVVA 120 VFVGQSDNVR QRLQRYGQAG GHLEGAKSTR LFVANKNDAT VTSSSWKNEL QNGVSDQEPV 180 ARRSSRSGGE PMSPEHSSGS RSPRGPRLFT EVFALGCSVA FRWAATDSKA VAEKVEEELL 240 EAFDYAWNKG ADGTRRSRDV LAKILIGVSS SSETSSCMGD SSLQKKWLCF GVKRVGIQVA 300 VRKPSRTVHD DAQSATANYS RRKTRGDGSA LWTRAHPNAL TVGLGTKAAK VSEFTKLEIP 360 AVVRCGFVLD NGVPCSAIPS KGRKRCTMHK DTKTTRNHRR SQAQVASTSP SHSCHHNLSS 420 SRSSTTDFRR HAAHSNSSSR AAAVARSSSS KSHGALACCL PFLGHDNKSS QHSAAAASAA 480 AGKQPPEVKR RGSLSFNTWL RTSELRRSQM SGAEWTMTEH ANQLKLVSSR TRSSQTSVSG 540 GKRSSSKCSS YTSSLPTCKE SETTRAKWS*

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MGLVSMSFNP SDDAVGAKAM SNHAGCSGHD TAPRWKREDY VHVKHDKLFS DWKVLVGPSD  60
WRDHAAGKEG VQRYRVQNLP GSHCGPGVYE LGVTGPAWLP VQQDQAGLGS NKLRSKEVVA  120
VFVGQSDNVR QRLQRYGQAG GHLEGAKSTR LFVANKNDAT VTSSSWKNEL QNGVSDQEPV  180
ARRSSRSGGE PMSPEHSSGS RSPRGPRLFT EVFALGCSVA FRWAATDSKA VAEKVEEELL  240
EAFDYAWNKG ADGTRRSRDV LAKILIGVSS SSETSSCMGD SSLQKKWLCF GVKRVGIQVA  300
VRKPSRTVHD DAQSATANYS RRKTRGDGSA LWTRAHPNAL TVGLGTKAAK VSEFTKLEIP  360
AVVRCGFVLD NGVPCSAIPS KGRKRCTMHK DTKTTRNHRR SQAQVASTSP SHSCHHNLSS  420
SRSSTTDFRR HAAHSNSSSR AAAVARSSSS KSHGALACCL PFLGHDNKSS QHSAAAASAA  480
AGKQPPEVKR RGSLSFNTWL RTSELRRSQM SGAEWTMTEH ANQLKLVSSR TRSSQTSVSG  540
GKRSSSKCSS YTSSLPTCKE SETTRAKWS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-45	effector of transcription2

Link Out ? help Back to Top
Phytozome	Sphfalx0031s0012.1.p