PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0031s0058.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

ERF

Protein Properties

Length: 226aa MW: 25288.2 Da PI: 9.9999

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0031s0058.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41	4.9e-13	115	157	2	47
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaai 47 y+GVr ++ ++Wv eIr ++++++lg++ t+eeAa+a++ Sphfalx0031s0058.1.p 115 VYRGVRHRSELNKWVTEIRP----TaHKRKIWLGTYKTPEEAARAYD 157 69*************999....2235****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.4E-20	115	174	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.488	115	172	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.77E-14	115	174	IPR016177	DNA-binding domain
Pfam	PF00847	1.1E-8	115	157	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-14	115	178	IPR001471	AP2/ERF domain
CDD	cd00018	8.31E-16	116	174	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MPGFLESVKV EKVKKVERID NDDFAGANFL SLRTGASGIT TGRRVHKDLE NNEIDLNWPP 60 VEHERGTEES STGTSEEESN SYNRSGSGAG VKAAASELHQ RKRHHQPGSN FHQEVYRGVR 120 HRSELNKWVT EIRPTAHKRK IWLGTYKTPE EAARAYDVGI YYTGKSIPLN FPESIESLPE 180 LPKGSWEELA PFVKKQALSA AKRARVQNND LPRTRILSKS IASRG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359180.1	7e-55	dehydration-responsive element-binding protein 1F-like
TrEMBL	A0A144LHE8	1e-55	A0A144LHE8_9BRYO; Dehydration-responsive element-binding protein 5-8
STRING	PP1S373_18V6.1	3e-54	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36450.1	2e-17	ERF family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0031s0058.1.p