PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0031s0166.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 652aa    MW: 69904.6 Da    PI: 7.1154
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0031s0166.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17193238147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg W + Ede+l ++v q+G+ +W++Ia++++ gR++k+c++rw++ 
  Sphfalx0031s0166.2.p 193 RGHWRPAEDEKLRELVSQYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 238
                           899*****************************.***********996 PP
2Myb_DNA-binding55.61.2e-17245289147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r ++T+eE+++l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ +
  Sphfalx0031s0166.2.p 245 RRPFTEEEEDRLLAAHQFHGNK-WAMIARLFP-GRTDNAVKNHWHVV 289
                           679*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.661188239IPR017930Myb domain
SuperFamilySSF466893.37E-29192286IPR009057Homeodomain-like
SMARTSM007177.7E-15192241IPR001005SANT/Myb domain
PfamPF002491.1E-16193238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-27194246IPR009057Homeodomain-like
CDDcd001671.59E-13196237No hitNo description
PROSITE profilePS5129425.202240294IPR017930Myb domain
SMARTSM007176.1E-15244292IPR001005SANT/Myb domain
PfamPF002494.7E-14245288IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-21247293IPR009057Homeodomain-like
CDDcd001672.65E-11247290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MCLQFAEGGE RMRSLSMNHA SLPNLLGSSS SLYSNCNLSF DDMTIRGPRN NSSSSSSTFR  60
AGASSYNSGS YDRASSTSGS DIQANVEAAS FTFQGALQSM SPGHTMWGGR GRSADNMSMS  120
LAAAGGYDTT TTSAEMKLSC SDEEEEEEME HACTSIDDIG KLDFGATNEE SENSLQLGPK  180
ADVDGVQSKL CPRGHWRPAE DEKLRELVSQ YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD  240
PRINRRPFTE EEEDRLLAAH QFHGNKWAMI ARLFPGRTDN AVKNHWHVVM ARKFRERSRA  300
AYGRRKPQQQ QLCRSSSRSV KRSCTGTSMS TLLHHHHHSL PADSLSTWME KYSLAAGDMS  360
TSASLDAAAA ACVSGITTAA ANGPSPPQEL LNSNDYQLPL SSMFSTPLSK IPRLSASSSD  420
SGSGEQVLDF RGSYGGSSCV SAAGVPQPVQ LAAGSRRAGL ILPSTKLMSE KLQQQQQEQQ  480
NMNSSSVNLG LLTRAAEARA ERGSSIVPSA LDSFLGLKAQ LQGANLQYAT NGGQLAPHWF  540
PSLRGLNQTL DKQLNGCSSV PQPAAATATA AFPSTARMQI NQFHEQQLTC KDTSLRLGAA  600
AASSSSSAWM CSSVDQMQAD HHIHAAQEIG SGLQPAAEAG IPFIDFLGVG A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-331932937107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-66myb domain protein 105