PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0032s0013.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WOX
Protein Properties Length: 242aa    MW: 27221.9 Da    PI: 8.5272
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0032s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-182282257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          r R+t+++ q ++Le+lFe+ n +p++++ +e+A++l    ++ e+++++WFqNr+a+ k+
  Sphfalx0032s0013.1.p 22 RVRWTPSQIQFQILERLFEQdNGTPNKQHLKEIADELrqhgQIAETNIYNWFQNRKARAKR 82
                          78*****************99**************************************97 PP
2Wus_type_Homeobox83.42.6e-272183264
     Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                          +r RWtP++ Q +iLe+l+++   tPnk+++++i+ eL+++G+i ++N+++WFQNrkaR +++
  Sphfalx0032s0013.1.p 21 TRVRWTPSQIQFQILERLFEQDNGTPNKQHLKEIADELRQHGQIAETNIYNWFQNRKARAKRR 83
                          678**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-161387IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-141887IPR009057Homeodomain-like
PROSITE profilePS5007114.2681883IPR001356Homeobox domain
SMARTSM003897.0E-112087IPR001356Homeobox domain
CDDcd000863.18E-92184No hitNo description
PfamPF000469.5E-162282IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MIGEQHLAHD QMGTPNHKPP TRVRWTPSQI QFQILERLFE QDNGTPNKQH LKEIADELRQ  60
HGQIAETNIY NWFQNRKARA KRRHQQVAQR CRTHLNQAKG AQQVSMKNGD SEVDTDADSP  120
RQKQPRYDRE LTQNNSENFA HVKRISFDQG NRSGNEQSPG QIDHHKWQQV TVSSVLVEKD  180
DIKPKIPFIA GGFDPHGFAQ GATVSSTVKI GDSSKPLQAA QDVNDEGTLP GDSKASDNSH  240
Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176WKA03e-42A0A176WKA0_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-27WUSCHEL related homeobox 13