PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0032s0014.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 464aa    MW: 51780.6 Da    PI: 5.9179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0032s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.15.9e-56281591128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelv++yL++k+ + ++++ ++i++vd++k+ePwdLp+k k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd
  Sphfalx0032s0014.1.p  28 LPPGFRFHPTDEELVSYYLARKLLNANFKV-HAISDVDLNKCEPWDLPEKSKIGEKEWYFFSLRDRKYPTGMRTNRATEAGYWKATGKD 115
                           79****************************.88***************99999************************************ PP

                   NAM  90 kevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++v+++     +g+lvg+kktLvfykgrap+g+kt+W+mheyr 
  Sphfalx0032s0014.1.p 116 RDVVTTgsrpvRGHLVGMKKTLVFYKGRAPRGVKTNWIMHEYRC 159
                           *****9777887888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6326188IPR003441NAC domain
PROSITE profilePS5100560.07128188IPR003441NAC domain
PfamPF023652.0E-2829158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAFFKPSSDN IGAFTYEEGK LESEPAWLPP GFRFHPTDEE LVSYYLARKL LNANFKVHAI  60
SDVDLNKCEP WDLPEKSKIG EKEWYFFSLR DRKYPTGMRT NRATEAGYWK ATGKDRDVVT  120
TGSRPVRGHL VGMKKTLVFY KGRAPRGVKT NWIMHEYRCE VDDRSTSNLH HHPRLSKDEW  180
VVCRIFQKNA ANKKPFLYAN YMPSSIATYQ LVNDAHPSLP SHDDLDHDQD QSPNPTVCTD  240
EGGPVPTDCS SLGPWMVRSK PCSAADATAL ESVDRMWSPG IDMHNTASCK GFLGSAASAS  300
LSRLLKQEIS DSQANALMQS KISSMKSSYP TAAAQNSYRY RSAVRTKMQQ QDPAYDCRGE  360
GEDEAQSTHI LRCGPDYYAT ANCWGAASGD NAVQLDEEVD VPYESRMVAL HESFSADQSS  420
CEFLYSGDEQ GVYNTNSNRN FGTSDVITAG PVDLVSESLW SCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-552819417171NO APICAL MERISTEM PROTEIN
1ut4_B5e-552819417171NO APICAL MERISTEM PROTEIN
1ut7_A5e-552819417171NO APICAL MERISTEM PROTEIN
1ut7_B5e-552819417171NO APICAL MERISTEM PROTEIN
3swm_A5e-552819420174NAC domain-containing protein 19
3swm_B5e-552819420174NAC domain-containing protein 19
3swm_C5e-552819420174NAC domain-containing protein 19
3swm_D5e-552819420174NAC domain-containing protein 19
3swp_A5e-552819420174NAC domain-containing protein 19
3swp_B5e-552819420174NAC domain-containing protein 19
3swp_C5e-552819420174NAC domain-containing protein 19
3swp_D5e-552819420174NAC domain-containing protein 19
4dul_A5e-552819417171NAC domain-containing protein 19
4dul_B5e-552819417171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372990.12e-91NAC domain-containing protein 46-like
TrEMBLA0A2K1KN355e-90A0A2K1KN35_PHYPA; Uncharacterized protein
STRINGPP1S227_100V6.19e-91(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-75NAC domain containing protein 100