PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0033s0016.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Nin-like

Protein Properties

Length: 784aa MW: 83926.5 Da PI: 8.2923

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0033s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.8	1e-23	487	536	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++dls+yF+l++ dAAk+Lgv++T+LK++CR++G+kRWP Rk++sl Sphfalx0033s0016.1.p 487 HHLKMSDLSAYFHLSVVDAAKKLGVSQTTLKKACRKFGLKRWPGRKVRSL 536 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	472	556	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-20	489	536	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MAGVLGPGAI EKVKFTVSVR GHQWSSARQV QETLQEFARV IQRNARRLDF IGDGDSIQRL 60 QLANADGTEP EELDVDATLE DVIICMGRNK QLVAIVNSSS KSSPPPPITE CNGRPDTEKL 120 GPASPMGLAS FHKPKAKNDT PPSSSLYGSF ATPGAASLVP EDNNTELPGV GVKPLQVLLK 180 NHGSVNYKPT CDPAPLRALK IMLPSSDPSP ATFHEEVSCA FTQEYEPCEP QVDCRQQLPA 240 MASRSNNFDV NGGGVGACAK GMQVAGAMFN SGLTPSPAEL AQFLVRGSTL PHQVSSSRGS 300 SISNGIPIKP LSNQSTPNAG FQSFGSELLS QLQVMPNSHM QCSTGTPNIA MLAQFLASQL 360 RAFAPVPGGA HPSADSAPIS PTHSKVVAPT KEVLGPTVMK LTPQTAGHDA TQCPETSLPE 420 FRSPKLAAVA ARVSVSESHE KDQSSSSANA NATAAPSSDG IDSEQVNGQS DLIFLVNRRS 480 KTGLGTHHLK MSDLSAYFHL SVVDAAKKLG VSQTTLKKAC RKFGLKRWPG RKVRSLESTI 540 HGLEHTIAVG QGAGMEELTE AYMRSEVTKL QQEMDQLVHG TPAQHSPVVR TADLYKRLYS 600 RGWRSKYHSP CSRFDLDLSN ASNNNEISIL SHSTRKPTEA TKLMNSGCKA QDGALLANEQ 660 EPIANNQKPN VNPKKDLQDL PTIAAVKDTI SNESNEPFPR ESTKDTKNVE ESAKTVLVEN 720 GATNGLISTT KIHHIPCLDR DQQPVDKDKP LPTERSPKRR KRECSRTASE AQGRPGLRSG 780 ACA*

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MAGVLGPGAI EKVKFTVSVR GHQWSSARQV QETLQEFARV IQRNARRLDF IGDGDSIQRL  60
QLANADGTEP EELDVDATLE DVIICMGRNK QLVAIVNSSS KSSPPPPITE CNGRPDTEKL  120
GPASPMGLAS FHKPKAKNDT PPSSSLYGSF ATPGAASLVP EDNNTELPGV GVKPLQVLLK  180
NHGSVNYKPT CDPAPLRALK IMLPSSDPSP ATFHEEVSCA FTQEYEPCEP QVDCRQQLPA  240
MASRSNNFDV NGGGVGACAK GMQVAGAMFN SGLTPSPAEL AQFLVRGSTL PHQVSSSRGS  300
SISNGIPIKP LSNQSTPNAG FQSFGSELLS QLQVMPNSHM QCSTGTPNIA MLAQFLASQL  360
RAFAPVPGGA HPSADSAPIS PTHSKVVAPT KEVLGPTVMK LTPQTAGHDA TQCPETSLPE  420
FRSPKLAAVA ARVSVSESHE KDQSSSSANA NATAAPSSDG IDSEQVNGQS DLIFLVNRRS  480
KTGLGTHHLK MSDLSAYFHL SVVDAAKKLG VSQTTLKKAC RKFGLKRWPG RKVRSLESTI  540
HGLEHTIAVG QGAGMEELTE AYMRSEVTKL QQEMDQLVHG TPAQHSPVVR TADLYKRLYS  600
RGWRSKYHSP CSRFDLDLSN ASNNNEISIL SHSTRKPTEA TKLMNSGCKA QDGALLANEQ  660
EPIANNQKPN VNPKKDLQDL PTIAAVKDTI SNESNEPFPR ESTKDTKNVE ESAKTVLVEN  720
GATNGLISTT KIHHIPCLDR DQQPVDKDKP LPTERSPKRR KRECSRTASE AQGRPGLRSG  780
ACA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396538.1	0.0	uncharacterized protein LOC112292373
TrEMBL	A0A176WKR2	0.0	A0A176WKR2_MARPO; Uncharacterized protein
STRING	PP1S250_38V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sphfalx0033s0016.1.p