PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0034s0012.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 138aa    MW: 15619.9 Da    PI: 9.8243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0034s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09242646
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          +eEd++lv++v+q+G  +W++I ++  + Rt+k+c + w +
  Sphfalx0034s0012.1.p  2 PEEDKILVEYVRQFGAQDWSSIRSKGLLPRTGKSCHLQWVN 42
                          7*********************8876677**********87 PP
2Myb_DNA-binding47.44.5e-155494345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                          +++ eE+ l v+  ++lG++ W++Ia++++ gRt++++k++w 
  Sphfalx0034s0012.1.p 54 KFSSEEERLVVEMQAKLGNK-WAKIASCLP-GRTDNDVKNFWS 94
                          79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.905144IPR017930Myb domain
SuperFamilySSF466893.0E-23293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-14246IPR009057Homeodomain-like
SMARTSM007170.011246IPR001005SANT/Myb domain
CDDcd001671.78E-8244No hitNo description
PfamPF139213.6E-10253No hitNo description
PROSITE profilePS5129418.20345101IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-184798IPR009057Homeodomain-like
SMARTSM007174.2E-115199IPR001005SANT/Myb domain
CDDcd001678.79E-115493No hitNo description
PfamPF002495.2E-135494IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MPEEDKILVE YVRQFGAQDW SSIRSKGLLP RTGKSCHLQW VNKLKPDLKR SGCKFSSEEE  60
RLVVEMQAKL GNKWAKIASC LPGRTDNDVK NFWSTRQKHF TTDVSADTSD LSKGCSLSEF  120
STFQVSLKGK LLPYLFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2339533122MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024363644.13e-68uncharacterized protein LOC112276493
SwissprotQ0JB892e-47MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A176VJF47e-67A0A176VJF4_MARPO; Uncharacterized protein
TrEMBLA0A3G9ESP14e-67A0A3G9ESP1_9MARC; R2R3 MYB transcription factor DUO POLLEN 1
STRINGPP1S16_281V6.19e-70(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.16e-48MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]