PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0036s0054.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 255aa    MW: 27362.7 Da    PI: 8.7956
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0036s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.77.4e-42681681101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++pe++r d++sslvyeA+ar+rdPvyG++g i++lqqq ++
  Sphfalx0036s0054.1.p  68 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKIFGASNVSKMLMEVPESQRADTASSLVYEANARIRDPVYGCMGAISALQQQAQS 156
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkeel 101
                           l+ael+++++e+
  Sphfalx0036s0054.1.p 157 LQAELNAVRQEI 168
                           ********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.39767168IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-4168165IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MADRTGSLDR RQLVVNSSPD RGGPISPLDR RAPAAGNRMQ EVVNSVSDRR TMMSSNPGHA  60
GQTNSSTPCA ACKLLRRRCA QECPFSPYFS PHEPQKFACV HKIFGASNVS KMLMEVPESQ  120
RADTASSLVY EANARIRDPV YGCMGAISAL QQQAQSLQAE LNAVRQEIMR YRRYDNAAAV  180
GAAAASPLTT GAAVMALGYN QAAHQLQDHD RGMVSAGALS SQTTASDNYS AIPSPNSVAT  240
PEMKPERSYW SPLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-45641717114LOB family transfactor Ramosa2.1
5ly0_B1e-45641717114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362454.12e-72LOB domain-containing protein 15-like
TrEMBLA0A2R6WX815e-80A0A2R6WX81_MARPO; Uncharacterized protein
STRINGPP1S156_26V6.18e-72(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.15e-59LOB domain-containing protein 15