PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0036s0080.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

ZF-HD

Protein Properties

Length: 304aa MW: 32125.1 Da PI: 8.4905

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0036s0080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.6	1.3e-32	91	147	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++rY+eC+kNhAaslG ha+DGCgEfmps geeg+a+alkCaACgCHRnFHRreve e Sphfalx0036s0080.1.p 91 TTRYRECQKNHAASLGNHALDGCGEFMPS-GEEGSADALKCAACGCHRNFHRREVEGE 147 789***********************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-23	81	150	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.6E-30	92	144	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.0E-30	93	144	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.77	94	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.94E-19	227	301	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.5E-31	230	302	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.5E-25	240	296	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MPLLTMDPSS HAETDIPATF TAQASVPPDS TTTTKLKMLN SGNNGSAAAA AMDEIQALEI 60 AAVSKTLSSS AGHNNNIKKQ QLDKIKAAAT TTRYRECQKN HAASLGNHAL DGCGEFMPSG 120 EEGSADALKC AACGCHRNFH RREVEGENLV CSDCYKFKDS KKRAASFAQA AGGFAQGTPV 180 SAAGTVAPGM GYPTSVTQYH QQGKPIAPIG LMALSTGAAD SDENEGGNIG GGGSSPSTIK 240 KRFRTKFSTE QKDEMCNFAE KLGWKMQKHD EAAVQEFCAN VGVKRHVLKV WMHNNKHTMA 300 KKA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-24	241	298	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024402412.1	4e-82	zinc-finger homeodomain protein 1-like
Swissprot	A2YWA6	2e-59	ZHD2_ORYSI; Zinc-finger homeodomain protein 2
Swissprot	Q6ZB90	2e-59	ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBL	A9RDY7	2e-81	A9RDY7_PHYPA; Predicted protein
STRING	PP1S3_539V6.1	2e-81	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-56	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Sphfalx0036s0080.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]