PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0037s0020.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family DBB
Protein Properties Length: 368aa    MW: 39348.6 Da    PI: 6.4082
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0037s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.51.8e-05444539
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                           C+ ++++++   C  +++ lC dC +  H        H++
  Sphfalx0037s0020.1.p  4 QCDVCDKNKAAVMCCADEVVLCTDCDTRVHAAnklankHQR 44
                          7******99*******************9965667777765 PP
2zf-B_box28.53.1e-095596338
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          +r C+ ++ek   +fC +++ llC++C +++H        H+
  Sphfalx0037s0020.1.p 55 ARSCDICQEKTGFFFCLEDRALLCRECDVSIHTAnslasnHK 96
                          578*******9*********************5456666676 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.257147IPR000315B-box-type zinc finger
CDDcd000213.36E-5344No hitNo description
SMARTSM003368.4E-7447IPR000315B-box-type zinc finger
SMARTSM003361.5E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS501199.28653100IPR000315B-box-type zinc finger
PfamPF006432.5E-75596IPR000315B-box-type zinc finger
CDDcd000219.64E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MKIQCDVCDK NKAAVMCCAD EVVLCTDCDT RVHAANKLAN KHQRIHLMSA SDVPARSCDI  60
CQEKTGFFFC LEDRALLCRE CDVSIHTANS LASNHKRFLV PGIRVALEAM VGQQAEPAAE  120
LVVPAEEVAA AAEAVAQYTP SSRRSSTTTC DTRSPGTTAN DFATTCRSSP VANPSEILPT  180
PAPKSLQGAM VVAAVPAKSA GMILQTPINN VHLQTGNSEV WKKSSITEFL IEAVPGWRVD  240
ELLSLAEMGD GFNTSAAHDI GSPCKADASN YTGSFNWTVD LRSFDEQVDV SSHRKVPQIP  300
TPPTMSGLFS STRSSILGSV KAINKQEAAA QHALPDFGNA FVVPDVDLCS SSTSRMLPKR  360
NRTQYGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.28e-46DBB family protein