PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0037s0054.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 674aa    MW: 72568.6 Da    PI: 7.074
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0037s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.9e-17195240147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg W + Ede+l ++v  +G+ +W++Ia++++ gR++k+c++rw++ 
  Sphfalx0037s0054.1.p 195 RGHWRPAEDEKLRELVSHYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 240
                           899*****************************.***********996 PP
2Myb_DNA-binding56.85.1e-18247291147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r ++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ +
  Sphfalx0037s0054.1.p 247 RRPFTEEEEERLLAAHRFHGNK-WAMIARLFP-GRTDNAVKNHWHVV 291
                           679*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.716190241IPR017930Myb domain
SMARTSM007172.8E-14194243IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-28194288IPR009057Homeodomain-like
PfamPF002492.7E-16195240IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-26196248IPR009057Homeodomain-like
CDDcd001676.11E-13198239No hitNo description
PROSITE profilePS5129426.077242296IPR017930Myb domain
SMARTSM007172.2E-15246294IPR001005SANT/Myb domain
PfamPF002493.6E-14247290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-21249295IPR009057Homeodomain-like
CDDcd001679.98E-7258292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MRSMSIHQEA DAGVPITNRG SSSCSLQYAG NCCTGSAAVS CFDAVDHTIR QRSSSSSLPA  60
SHNSSYERAS SSTGSDNNNN NKEANVESFA AFQALTIMSP GGLQGMATWG RPRSSVDSFG  120
AGGYDMNSCA EIKLSCSDEE NCVPEHAAVC SLDDDDDAAH IKNSTNEEEE EEEESELNSK  180
EDHGDGGVQS KLCPRGHWRP AEDEKLRELV SHYGPQNWNL IAEKLQGRSG KSCRLRWFNQ  240
LDPRINRRPF TEEEEERLLA AHRFHGNKWA MIARLFPGRT DNAVKNHWHV VMARKFRERS  300
RAYGRRHSSK TPQQQQQQLV SSCRSSRPHA GKRSSNSSSS SSSLIINSSV GVDADQLPFS  360
MRSTSFSTLP LSKVPRLSSS SDSRDVDLRG AGGYGAAPTY SSLQLRSQHV DNAIILAAAA  420
ASSRSSAFQL PATKLLQDEE IMLHLQHTAA AMQDHHSSSV PRGRQLYAAA PPDDHHYYCT  480
SYPSLHQLNQ SRVVDQLAGG LHPSRLDLNA TACIHDDEAT ASRASSSGTG GAASSLNHHP  540
SIRAYINQKQ QQQLLHEQRT CSSSKDATCL RLMGAATSAP VAAAAAATSS SSSSTWAATS  600
AAAKLHSDQM QQQQQQQQQQ QSSEKLHIFH NIAAHQEKIA AATQAGPAAA AAAPAPAVDQ  660
TGTPFIDFLG VGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-331952957107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-63myb domain protein 105