PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0037s0089.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 511aa    MW: 57828 Da    PI: 7.9002
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0037s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.11.5e-15253339286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W+   v +L++++++++ +l+rg+l+ ++W e+++ +     r++ r+  qCk+k+e+++k ++ +++ e+k  +++ s++p+++++e
  Sphfalx0037s0089.1.p 253 WCSAGVSCLLDLYEDRWVQLGRGNLRTNHWVEIAEELtkqCPRQLPRTGPQCKNKIEKMKKSFRTERAEEEKPGARH-SKWPWYSRME 339
                           9999*********************************8777899***************************975555.59*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.6202.4E-417195IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF524022.21E-3216190No hitNo description
CDDcd017132.61E-3640195No hitNo description
PfamPF015076.2E-2041201IPR002500Phosphoadenosine phosphosulphate reductase
PfamPF138371.6E-17252341No hitNo description
SMARTSM005952.5E-5260346IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MNEMEMWKAV EETGDKRLQA RVKNAYSVIE RTLALYKTDE IVFGFSGGKD STVVLHLLRA  60
GYAALASGGD DNSNLQSHIR TVYFKHPDAF PEIDAFTLET PSLYPLDMEV VRLEFKAGID  120
ALHKEKPIRA IVLGTRMGDP NTVGLGEFAP SSPGWPPFMR VNPILDWTYR DVWAFISACK  180
LPYCRLYDQG YTSIGKLHDT LPNPALFASK DKFKPAYLML DERLERAGRV KVISLEERER  240
EGFKDKVELD RVWCSAGVSC LLDLYEDRWV QLGRGNLRTN HWVEIAEELT KQCPRQLPRT  300
GPQCKNKIEK MKKSFRTERA EEEKPGARHS KWPWYSRMEQ LLTGVVKQDE KGGSLCHIPA  360
VHCSSSSLDK ETLLHDAWRC PSPLPQPMQG CSQSPTRVSV HKVEDENGSF STLPPTGLET  420
WGTRPHEDNL VDNPLISKKK RSYEQTSPSL AEAIQSLGEG LVKIECMRAE MELKSREIFL  480
QSQIQLASLF AKSSEEKKRK TTKHANTSNN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2wsi_A9e-204023155305FAD SYNTHETASE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.22e-21Trihelix family protein