PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0039s0014.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 457aa    MW: 49094.4 Da    PI: 6.2757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0039s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-11240281854
                           HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            Er+RR+++N+++  Lr l+Pk +      K++Ka+i   Av+Y+++L
  Sphfalx0039s0014.1.p 240 SERKRRKKLNEGLYSLRALVPKiS------KMDKASIIGDAVNYVQEL 281
                           6*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.389232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-15237293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-15238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-12239286No hitNo description
Gene3DG3DSA:4.10.280.103.0E-14239290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8240281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MRGGSQESAA GWLDCKSSIG SFDVLHPSVV SPSGHSQVGC INTLLSGCQC LNEHHTTIGQ  60
PHLATVTGAG GNYHLDFPAQ ESKPWLVTSK SMDPLFMLQE LSNGISMEDS KGILASFAGS  120
ASNNIPHIPS ENVKPQTMPE WNELKPVASK SLTSISISAT ELNKATAGSA RGVSKLNLKD  180
AHTPASLSLP LDNGLANDLE LNVEANWQAE SSDCSGELKK CGKARSQLAT RNGASKNLVS  240
ERKRRKKLNE GLYSLRALVP KISKMDKASI IGDAVNYVQE LKKEVEEMEN LESSNLESKC  300
CGSVGDDSGS ISMDITGEDA AGITVINLYD GNTGEPAKIA SLNADITNHK SSKMKTENPP  360
SQFCSGKKIL HVEVARLEDQ TYHLRILCQK GHGVLVQLMQ ALESLGIDVV NAHHTSFQDN  420
ILNTFVAQIK NWEMMETEEV RQKLLGVAAQ YGLVQT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240247ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393069.15e-76transcription factor bHLH35-like
RefseqXP_024393070.15e-76transcription factor bHLH35-like
RefseqXP_024393071.15e-76transcription factor bHLH35-like
RefseqXP_024393072.15e-76transcription factor bHLH35-like
RefseqXP_024393073.15e-76transcription factor bHLH35-like
RefseqXP_024393074.15e-76transcription factor bHLH35-like
RefseqXP_024393075.15e-76transcription factor bHLH35-like
RefseqXP_024393076.15e-76transcription factor bHLH35-like
TrEMBLA0A2K1JKZ21e-74A0A2K1JKZ2_PHYPA; Uncharacterized protein
TrEMBLA9T8629e-76A9T862_PHYPA; Predicted protein
STRINGPP1S182_7V6.32e-75(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.17e-27bHLH family protein