PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0041s0085.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 743aa    MW: 80446.8 Da    PI: 7.2273
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0041s0085.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT+eEde+l  +v  +G+g+W+++ r+ g+ R++k+c++rw +yl
  Sphfalx0041s0085.1.p 14 RGAWTAEEDEKLRAYVGSHGTGHWRSVGRKAGLQRCGKSCRLRWTNYL 61
                          89********************************************97 PP
2Myb_DNA-binding50.16.3e-1668110246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g++T+ E++l+v+++  lG++ W++Ia++m+ gRt++++k++w++
  Sphfalx0041s0085.1.p  68 GSFTPYEEDLIVKLHSSLGSR-WSLIAARMP-GRTDNDIKNHWNT 110
                           78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.951965IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-211064IPR009057Homeodomain-like
SuperFamilySSF466894.03E-2912108IPR009057Homeodomain-like
SMARTSM007174.5E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
CDDcd001671.51E-101661No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129420.62466116IPR017930Myb domain
SMARTSM007171.8E-1366114IPR001005SANT/Myb domain
PfamPF002492.6E-1468110IPR001005SANT/Myb domain
CDDcd001675.01E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MSRVAIADRD DLRRGAWTAE EDEKLRAYVG SHGTGHWRSV GRKAGLQRCG KSCRLRWTNY  60
LRPNIRHGSF TPYEEDLIVK LHSSLGSRWS LIAARMPGRT DNDIKNHWNT RLKKKLCNMG  120
IDPVTHKPIS ELLRDIAGTM QPDGSSAAGC NNPMAAAGEE AARRCFSDNL LRKAVRDYSR  180
TSASAPAGPS KYTDHSVISG AACAAPDFNL HSCSDVELEL SGGDRQYCGD VSTLAAQSTS  240
SLIQKEAAVA VDEDLHSWEH SISSTTSNCM SGHRNSCSEV DEVNLERSTS RSPSSRSMQN  300
LQVNSTSSRS KNNMEAAASC WGSQLNITTD CRHHHLHHAA DYTSPGTSPA AFLYLPTAPP  360
LAAASSIKEN NPTNNLELSF KSSRDQHHGN LIKELHEISR QFFPAASHGS CRSPTPTTTT  420
SGSRSSSTAS QLVQRPPPPP VHNFLSDHYV DHQLVPCSWR TTSSMNAATA AAAAGTSTTS  480
SSAASTLQVD ELAAAVQLLP CSSNKLQQYA VPTSSSRFST DESNLQLHII KQHQQQTYFN  540
FSDTFDMDLM KTRPHHIPMD QRQQQQQEED HHVENSMISR HEYYNNQINP AGLNFNQLQV  600
TSDLELPAAA ATGAYLRTQL REPISSSYNN NAAAAIVASS SACTAHVAAP HQTLMSSFAT  660
AATGSPSALS SSSFTSSAGP AEAAAAALHI SNFSTGAPDP PLTMAMTTPA SGMNSIRVHG  720
HHSYDHQNIQ TSRVQVLWDF QE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26111164108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.15e-64myb domain protein 103