PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0041s0116.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 788aa MW: 86547.6 Da PI: 6.4583

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0041s0116.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	361.5	1.2e-110	405	773	1	372
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l +lL++cA++++++d ++a++l+a+l++++s g++ qR+++yf+eAL ar+++++ +ly a++ ++ s e+l+a+ f++ +P Sphfalx0041s0116.1.p 405 LHHLLFRCAQVIEANDISQANKLIAELRQHSSAIGNAEQRMTHYFLEALVARMTKTGGQLYTAVNHNHPS---APEVLKAFLSFFDHCP 490 579***********************************************************999998...8999******** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 +lk+s++ N aIl+a+ ++rvHi+D++i +G+QWp+L+ L++ p+gpp+lRiTg++ p++g +e+++etg+rLa +A++lgvpf Sphfalx0041s0116.1.p 491 LLKMSYFFSNMAILQAFGDAKRVHIVDYGILYGMQWPSLIYHLSQLPGGPPHLRITGIDWPKPGfrPTERIKETGHRLACVAQQLGVPF 579 ************************************************************99********************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 +f++ +a+++e++++ +L ++++E+laVn++++lh+l+de v +s+r+ +L+ ++s++Pk++v+ + ++n++ F+ rf a+++ys Sphfalx0041s0116.1.p 580 DFHA-IAEKWEAITPAHLFLRRDEVLAVNSIYRLHHLYDEYVMAASPRSLLLSRIQSMNPKIFVHGVVNGNYNAPFFMSRFQGAMDHYS 667 .7******************************************************************************* PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 alf+ + a lp+e+ +r+ vE+e+ gr+i n++aceg er+er e + +W++r +aGF+++p+se++ +++++llr+++ g+ + e+ Sphfalx0041s0116.1.p 668 ALFEVFGALLPAEHPNRALVEQEFHGRAILNILACEGLERVERAEPYTSWQARSLRAGFTQMPISESTKAKIRALLRHYP-TGFAIGED 755 ****************************************************************************.99** PP GRAS 355 sgslvlgWkdrpLvsvSa 372 +g+l+ gW+++ +++++a Sphfalx0041s0116.1.p 756 NGWLLAGWNGKIVYALCA 773 *************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.075	379	756	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-108	405	773	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence Send to blast
MAGRKDAKSG GSGGEVSPLA LQLQQAWVHT QMPNAKKRSA SSQLTNSCMP PTQQREQQQS 60 ALESLSSIFP ELAARLPQKK KPMLFPVFQE GEDPTPKEVE VGFTDDALRS SCPFLFPHDR 120 LQSVVSRTQC VTTPASPLPH RPPLSATTRV VHNSNSSAHL APAAPADLAS HFFPKNSTSL 180 ASLRDAYPSP DDKGTAPSQG EAGSSPPNLA DLDGVDFFMT EGEANTFHEY VNSFVEEEPE 240 FNKCMFLESS AYQAMAQEVG DLIAGDDASQ FDIETLEKAL YSDDWLNDIL GGPVVADILD 300 GLKNGSRNSF TNDEAGHPFL DLDPGNRGLG APSRTETQPP EAAAALGAQS SMSQCSFNSE 360 SLTACSEDAL HHSHIPDGGG NSHHVSKPTS SLWITNGHPV LQDDLHHLLF RCAQVIEAND 420 ISQANKLIAE LRQHSSAIGN AEQRMTHYFL EALVARMTKT GGQLYTAVNH NHPSAPEVLK 480 AFLSFFDHCP LLKMSYFFSN MAILQAFGDA KRVHIVDYGI LYGMQWPSLI YHLSQLPGGP 540 PHLRITGIDW PKPGFRPTER IKETGHRLAC VAQQLGVPFD FHAIAEKWEA ITPAHLFLRR 600 DEVLAVNSIY RLHHLYDEYV MAASPRSLLL SRIQSMNPKI FVHGVVNGNY NAPFFMSRFQ 660 GAMDHYSALF EVFGALLPAE HPNRALVEQE FHGRAILNIL ACEGLERVER AEPYTSWQAR 720 SLRAGFTQMP ISESTKAKIR ALLRHYPTGF AIGEDNGWLL AGWNGKIVYA LCACKPTSRM 780 TSRKQPP*

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence Send to blast

MAGRKDAKSG GSGGEVSPLA LQLQQAWVHT QMPNAKKRSA SSQLTNSCMP PTQQREQQQS  60
ALESLSSIFP ELAARLPQKK KPMLFPVFQE GEDPTPKEVE VGFTDDALRS SCPFLFPHDR  120
LQSVVSRTQC VTTPASPLPH RPPLSATTRV VHNSNSSAHL APAAPADLAS HFFPKNSTSL  180
ASLRDAYPSP DDKGTAPSQG EAGSSPPNLA DLDGVDFFMT EGEANTFHEY VNSFVEEEPE  240
FNKCMFLESS AYQAMAQEVG DLIAGDDASQ FDIETLEKAL YSDDWLNDIL GGPVVADILD  300
GLKNGSRNSF TNDEAGHPFL DLDPGNRGLG APSRTETQPP EAAAALGAQS SMSQCSFNSE  360
SLTACSEDAL HHSHIPDGGG NSHHVSKPTS SLWITNGHPV LQDDLHHLLF RCAQVIEAND  420
ISQANKLIAE LRQHSSAIGN AEQRMTHYFL EALVARMTKT GGQLYTAVNH NHPSAPEVLK  480
AFLSFFDHCP LLKMSYFFSN MAILQAFGDA KRVHIVDYGI LYGMQWPSLI YHLSQLPGGP  540
PHLRITGIDW PKPGFRPTER IKETGHRLAC VAQQLGVPFD FHAIAEKWEA ITPAHLFLRR  600
DEVLAVNSIY RLHHLYDEYV MAASPRSLLL SRIQSMNPKI FVHGVVNGNY NAPFFMSRFQ  660
GAMDHYSALF EVFGALLPAE HPNRALVEQE FHGRAILNIL ACEGLERVER AEPYTSWQAR  720
SLRAGFTQMP ISESTKAKIR ALLRHYPTGF AIGEDNGWLL AGWNGKIVYA LCACKPTSRM  780
TSRKQPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-55	411	778	24	381	Protein SCARECROW
5b3h_D	5e-55	411	778	24	381	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-118	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Sphfalx0041s0116.1.p