PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0041s0122.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23354.1 Da    PI: 5.3585
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0041s0122.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF368.6e-1226561747
                          HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                SRF-TF 17 rngilKKAeELSvLCdaevaviifsstgkly 47
                          r g++KKA+ELS+LC++ v +i+fs+  k +
  Sphfalx0041s0122.1.p 26 RVGLIKKASELSILCGTHVGIIVFSEARKAF 56
                          679**********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.0E-5961IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-72439IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-112671IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.6012662IPR002100Transcription factor, MADS-box
PfamPF003193.7E-122658IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-73960IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.10.601.102.5E-475165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGGEQRSRSE EKRIQVCVRC ASPSARVGLI KKASELSILC GTHVGIIVFS EARKAFSFGH  60
PCVDYVIEKT LLMRECSDDD NDDDDEEEEE ESKKKGDSGG GTGSSRKQRK NRDMIAEQKS  120
VAVSSGIHEL QYVQQRIDAL YQLLVRRASC LQHQQQQIAA VVNSTPILFN EDHDQSQFLH  180
LELAPDPSCS TLTTNAAARQ QIYDLQQQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111RKQRKNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-14AGAMOUS-like 61