PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0042s0129.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 386aa    MW: 43295.1 Da    PI: 10.1558
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0042s0129.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.43.7e-1324108286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W  +e++aL+++  +   +++rg+l  ++W+++ +++ +    +rs kq+++k + ++kryk++k  +++ t e++st+ yfd++e
  Sphfalx0042s0129.1.p  24 WNSEEIKALVDVWGDAYMKIKRGNLTNKHWSDITQQInSLLNTNRSEKQVRNKVDTIKKRYKREKGKRSR-TGEVKSTWEYFDRVE 108
                           *************************************555788********************9988876.799999******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.8E-1821108No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAAANARPQL SESSQALNFQ RENWNSEEIK ALVDVWGDAY MKIKRGNLTN KHWSDITQQI  60
NSLLNTNRSE KQVRNKVDTI KKRYKREKGK RSRTGEVKST WEYFDRVELL LGCTLKNTAT  120
PQLGLSGGAD LKLGSEILNL KERQTPAVAP AAPNPNVGVK VSSEHGSLDG SMDSGNESAS  180
EERSSSPPIG FNTFATPRTQ DCSIPGGYIP KEEGRMKGKR KRLKSSSQFN SVAESIQLFG  240
DALFKIEQMK LELGRDLEER RLQMAKDMEN RRLELAERHL QRKEAMEERR MQRKEAMEER  300
RREMQIALMR MKLEFASKKG TLTDDEYEQA KSVQEAMKLI PSRSADMTKN QSKGSVCEPA  360
GNGQAMTKHV SGLPAEIATR ASNAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.19e-18sequence-specific DNA binding transcription factors