PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0043s0032.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 344aa    MW: 35882.9 Da    PI: 8.8419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0043s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-094285344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                           WT+e d+++ +a   +  +   +W+ Ia++++ g+ + ++k ++
  Sphfalx0043s0032.1.p 42 VWTKEQDKQFENALDIHDQDspkRWENIAAMVP-GKDATEVKRHF 85
                          7*****************99*************.**********8 PP
2Myb_DNA-binding38.72.4e-12188232347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +W++eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  Sphfalx0043s0032.1.p 188 PWSEEEHRLFLLGLAKFGKGDWRSISRNFVISRTPTQVASHAQKY 232
                           7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.6833893IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.9E-43989IPR009057Homeodomain-like
SMARTSM007171.3E-83991IPR001005SANT/Myb domain
SuperFamilySSF466892.37E-104195IPR009057Homeodomain-like
PfamPF002494.8E-74285IPR001005SANT/Myb domain
CDDcd001674.11E-84385No hitNo description
PROSITE profilePS5129416.96180237IPR017930Myb domain
SuperFamilySSF466897.03E-16183238IPR009057Homeodomain-like
SMARTSM007171.1E-10185235IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.7E-16185235IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.9E-11186231IPR009057Homeodomain-like
PfamPF002497.0E-11188232IPR001005SANT/Myb domain
CDDcd001677.73E-10188233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAAPSPGEVA AAAAADATPS LSSLPTQSPP SLTTSSSSHE SVWTKEQDKQ FENALDIHDQ  60
DSPKRWENIA AMVPGKDATE VKRHFEILQE DVSLIDAGRI ALPNYSPSSL STSSEEATAA  120
AGGLSDTANL GGSTKKQAAL YHHGHASASG SGGGGTNANG SNGSSVLGGG KGVGSSKSAD  180
QERRKGIPWS EEEHRLFLLG LAKFGKGDWR SISRNFVISR TPTQVASHAQ KYFIRLNSIN  240
KDKRRSSIHD ITSVNNGDTM QQGQQGPITG QPALVPIPGQ PVQQPTGVYP GGQAPAVGAP  300
VMLPPPGHVP FGARGHLPRP GMPGPPMPFP HMAYPMTQPS MHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-16431161184RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366442.11e-129transcription factor SRM1-like
RefseqXP_024366443.11e-129transcription factor SRM1-like
TrEMBLA0A2K1KNU41e-128A0A2K1KNU4_PHYPA; Uncharacterized protein
STRINGPP1S13_201V6.11e-129(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-52MYB family protein