PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0043s0043.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 352aa    MW: 36877.3 Da    PI: 5.7586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0043s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-06325348123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           ykC+dC+k F++ s L+ H    H
  Sphfalx0043s0043.1.p 325 YKCSDCDKGFTSESGLTMHKAAkH 348
                           9******************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0017325348IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.261325351IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-4325344IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280327348IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEFFGIEVPA GKPVTCSPGQ GMYLHISQAA LDEIKNVDET TAEKSNKRVV IRAQVGDEKE  60
IVLGTLSYGR CDQMPLDLVF GSDFKISHNS PDCSIYVCGY RTQAPDGELY CSDEEDEDRH  120
YLDASLAKDV TKDEAKPKSL PPATVAVSGK SNGDAAEGKT VKTAKPGKLA DPLAVAKAAK  180
LAGTALGAAA IKAVDAVQKH GNGDEDDQDM ADDDDDDVAN EANKSDEKDL KIEASKAGKK  240
RPAVDSPKVV PSEKKAKVDA AEKLGNKAAA EYWQSLIAAG SKGKSPTLDK KGNIPAGNTP  300
STKAPKGTPG VIPTTPTSGK KSGDYKCSDC DKGFTSESGL TMHKAAKHPV K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.28e-22histone deacetylase 3