PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0043s0127.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 319aa    MW: 34313.6 Da    PI: 8.014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0043s0127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-202373256
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +++GVr ++ +gr++AeIrd ++    ++r++lg+f+taeeAa+a++aa+++l+g+
  Sphfalx0043s0127.1.p 23 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDAAARALRGA 73
                          69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.09E-172279No hitNo description
PfamPF008471.9E-132372IPR001471AP2/ERF domain
PROSITE profilePS5103222.6032380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-312380IPR001471AP2/ERF domain
SMARTSM003802.9E-342386IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-212379IPR016177DNA-binding domain
PRINTSPR003676.8E-112435IPR001471AP2/ERF domain
PRINTSPR003676.8E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAQRIERGGS TTINPHQAEQ GAHFRGVRKR PWGRFAAEIR DPWKKTRVWL GTFDTAEEAA  60
RAYDAAARAL RGAKAKTNFV SPCDDQSTSQ SSTVESWSSP KNLYHRTPPA ADAAAHTKNL  120
YNNRSGGVCD SSWRSCGLDL NVAIVDNMVA CVEELPSSRA AAAAFKSVSS AAGCSCIMSP  180
AEAITCALSG GKRGAPSLNP IQALFEDDDH HPTLPCDKRP KSLKIKDGMF TTERRDLGVE  240
KDWLGVKMVG MQQQSIGGGG ETPRACHSDC DSSSSVILNS EATAFCSQPQ QPQQQQQDAK  300
PVMLRTLPLL DLNLPPCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-202079262ATERF1
3gcc_A2e-202079262ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367682.12e-72ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A2K1IA664e-71A0A2K1IA66_PHYPA; Uncharacterized protein
STRINGPP1S487_24V6.16e-72(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-18erf domain protein 9