PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0044s0002.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 752aa    MW: 81218.2 Da    PI: 7.2181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0044s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-17238283147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg W + Ede+l ++v q+G+ +W++Ia++++ gR++k+c++rw++ 
  Sphfalx0044s0002.1.p 238 RGHWRPAEDEKLRELVSQYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 283
                           899*****************************.***********996 PP
2Myb_DNA-binding54.62.5e-17290334147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r ++T+eE+++l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ +
  Sphfalx0044s0002.1.p 290 RRPFTEEEEDRLLSAHRFHGNK-WAMIARLFP-GRTDNAVKNHWHVV 334
                           679*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.661233284IPR017930Myb domain
SuperFamilySSF466895.99E-29237331IPR009057Homeodomain-like
SMARTSM007177.7E-15237286IPR001005SANT/Myb domain
PfamPF002491.3E-16238283IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-27239291IPR009057Homeodomain-like
CDDcd001672.02E-13241282No hitNo description
PROSITE profilePS5129425.29285339IPR017930Myb domain
SMARTSM007179.1E-15289337IPR001005SANT/Myb domain
PfamPF002494.8E-14290333IPR001005SANT/Myb domain
CDDcd001673.57E-11292335No hitNo description
Gene3DG3DSA:1.10.10.601.9E-20292338IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MSIMCLLQLG EEGGKSTRMP STTCTKAATQ ASVNQAPPPH GHQLPNLGSL QYSSSTLSLS  60
FDDKFRCSSS SSSLFPTTSS CYEQQRAASG TSAGSDIRAI NEALAFQALS MQSPAAAAAG  120
AHEGMMPWGS CRRAAASQVD HHSCLFSSCC SEEEDEEEAA EEELEMELLH GGGGCSSMEN  180
DMMIKQQQDL DSTCINAAEE SENSLPGAGG GSVAGYNSKD HLHAVDGGGV HESKLCPRGH  240
WRPAEDEKLR ELVSQYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RPFTEEEEDR  300
LLSAHRFHGN KWAMIARLFP GRTDNAVKNH WHVVMARKFR ERSRAYGRRK PQHHQQQQQP  360
HHHHHHQQQQ QLCRLQRAGK RSTSSMTPAA DSLTAWMEKY TLAAAGCNNG SGTGDTSTST  420
SLDACVSGTT TVANVLSPQE FNSIDNTLSM FSSRTPPPLS KMPRLSSSSS SASRDSRDQQ  480
NLLLDLDHHH QQQQQQQQHR HQQHHFRASR GGYGDTASCC LPAGALPHQQ QPPENNAMIL  540
AAGASRAFLP AAATTMLLGE KQLQQTMSSS SVNLGLLTRA AEARAERGSS SMIVPKALDS  600
VLGLQSKTPA AAGHAGLQQL APHWFPSLHE LNQRKDLNAG CMLQQATTAA AASSSATFPS  660
CDRIKQFQEQ SLITCKDMTS LRLGGAAAAG SSSTSSSISW ASAVDQLQLQ AHATGDHHIH  720
ATQEIAATTQ LQPDHQAGCC IRFIDFLGVG A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-332383387107B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-67myb domain protein 105