PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0044s0051.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family DBB
Protein Properties Length: 347aa    MW: 37537 Da    PI: 6.1154
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0044s0051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.7e-07446541
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           C+ +e+k ++  C  ++  lC dC   +H+       H++vp
  Sphfalx0044s0051.1.p  4 QCDSCESKFASVMCCADEAALCSDCDARIHSAnklaskHQRVP 46
                          6*****************************6689999999987 PP
2zf-B_box315.2e-105294238
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          e+  C+ ++ek + +fC +++ llC++C l++H        H+
  Sphfalx0044s0051.1.p 52 EPSHCDICQEKLAFFFCLEDRALLCQNCDLSIHTAnalsskHR 94
                          6789*****************************5456666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.168147IPR000315B-box-type zinc finger
CDDcd000213.71E-6346No hitNo description
SMARTSM003361.2E-8447IPR000315B-box-type zinc finger
PfamPF006432.8E-5446IPR000315B-box-type zinc finger
Gene3DG3DSA:3.30.60.208.4E-44985No hitNo description
SMARTSM003361.0E-155198IPR000315B-box-type zinc finger
PROSITE profilePS501199.7695198IPR000315B-box-type zinc finger
PfamPF006437.8E-85294IPR000315B-box-type zinc finger
CDDcd000216.15E-105598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRIQCDSCES KFASVMCCAD EAALCSDCDA RIHSANKLAS KHQRVPFLTV SEPSHCDICQ  60
EKLAFFFCLE DRALLCQNCD LSIHTANALS SKHRRFLVPG TCMSLDAIPV VESIEPLTLV  120
ASTCSAEVST SFHDPCIPKA VTQSLKSGER LIPSSCAANM ATDLNPRATF GVPSSASHHS  180
NNVILPSRLQ GASAANLMSM PSLSTAHQSS GLLLQKSSIA EFLTDPIPGW QVDELLKLPD  240
LDEGYNISDS AKGEAMTLGE VDWMPGFSLH QNQLIADALC EVPQLPYPQT PALPEIMPHP  300
SRANSGTLKG KRNQEPILPT GFCDAFVVPD LDIQRSPYFP KRKKKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339345PKRKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-39light-regulated zinc finger protein 1