PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0044s0075.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-YA
Protein Properties Length: 277aa    MW: 29501.9 Da    PI: 7.9277
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0044s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.72e-33109165158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh+hAlrR+Rg+gGrF
  Sphfalx0044s0075.1.p 109 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRKPYLHESRHQHALRRARGCGGRF 165
                           69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.0E-38107168IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.587108168IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-28110165IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.0E-24111133IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860113133IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.0E-24142165IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MQAPLPPPPD AQAAPPPRMQ AIPTHSGFEG ASVDEQQQAL PTGVLASGEY MLPHTQLELG  60
HSMARAAYPY ADPYFGGIAL AYGAQAMIHP HMLGMQQARM PLPSEMMEEE PVYVNAKQYH  120
GILRRRQSRA KAESENKLIK SRKPYLHESR HQHALRRARG CGGRFLNKKV KEGDSQANPD  180
NNRSSEGQSS QGRMVSDSQA SNPGQGMMGA QGEVAGYYPA MLAPSGSNAY QNHHLAGPIH  240
SSAFHPLPGA SDAGEGGSSG NSIVSSSPQE TAVSTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21109179272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388759.11e-119nuclear transcription factor Y subunit A-9-like isoform X2
TrEMBLA0A2K1JVK41e-116A0A2K1JVK4_PHYPA; Uncharacterized protein
STRINGPP1S31_299V6.11e-117(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.28e-36nuclear factor Y, subunit A7