PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0045s0092.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 642aa    MW: 69281.8 Da    PI: 7.5486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0045s0092.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14e-181360148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT+eEde+l  +v+ +G+g+W+++ r+ g+ R++k+c++rw +yl
  Sphfalx0045s0092.2.p 13 RGAWTAEEDEKLRAYVAAHGTGHWRSVGRKAGLQRCGKSCRLRWTNYL 60
                          89********************************************97 PP
2Myb_DNA-binding54.62.5e-1767109246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g++T++E++l+v+++  lG++ W++Ia++m+ gRt++++k++w++
  Sphfalx0045s0092.2.p  67 GSFTPDEEDLIVKLHSSLGSR-WSLIAAKMP-GRTDNDIKNHWNT 109
                           78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.415860IPR017930Myb domain
SuperFamilySSF466896.24E-3011107IPR009057Homeodomain-like
SMARTSM007176.0E-141262IPR001005SANT/Myb domain
PfamPF002491.6E-151360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221467IPR009057Homeodomain-like
CDDcd001672.99E-111560No hitNo description
PROSITE profilePS5129426.8361115IPR017930Myb domain
SMARTSM007172.9E-1565113IPR001005SANT/Myb domain
PfamPF002491.7E-1567109IPR001005SANT/Myb domain
CDDcd001671.58E-1168111No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2468115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MSRLALAGDD LRRGAWTAEE DEKLRAYVAA HGTGHWRSVG RKAGLQRCGK SCRLRWTNYL  60
RPNIRHGSFT PDEEDLIVKL HSSLGSRWSL IAAKMPGRTD NDIKNHWNTR LKKKLCNMGI  120
DPVTHKPISE LLRDIAGTMD GSAGNPMMVA AGEEARRCFS DNLLRKAVRD YTRTSSAPGG  180
QSKYDSISCA ATDFNLVQSS DPVSLRQPAA AAADHCDVSA IAHSSLIQNE AAEDLHSWDR  240
SITSTSNCNM AGHADNSACS EEDAAVDLSR SNSRSPSRST MQNLVNSSPS RSSKNNMQQQ  300
GSCFRAAIIS TATDHHHPSS DEVASCRQQN LIDHHHADAA ISCPTTPAGT FHLPAASASS  360
TKENLMNPLE MGSQSSSCTD NPDSAVIKEM HEISRQFLPA ASGRTSWRSS NSQHQQLVRP  420
ALHFLPDSTT LPCWRTLMNT GTSSCTTTTS GTAAVLDELA VPSCTSSKHV PSRFSTESNL  480
LQIKRQLQPF NFPEADTTHF SHSMDFKRPH LMDHPGQDHH HHHVLSSSRS QYNNSNPAAG  540
FTLQASHAPG SELPGAYLSL REPLSPTCYT PGAAAATGAI TAPAQLVSSF AAGPFTSFGT  600
GPSISSFLSG PTSANPGTTG MRIGHHYDLQ SPRVVLWDFQ E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27101154108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.17e-62myb domain protein 103