PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0046s0041.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HSF
Protein Properties Length: 639aa    MW: 68378 Da    PI: 8.5326
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0046s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34931842102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y +++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+
  Sphfalx0046s0041.1.p  93 FLTKTYFLVNDPSTDDIVSWGEDNTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRRGE 172
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++i+r+ks
  Sphfalx0046s0041.1.p 173 KQLLCEIRRRKS 184
                           *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.5E-3786177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5889182IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.35E-3390182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-3193182IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-1993116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-19131143IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340132156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-19144156IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MLASSTGRLI ISGNNNITIK LCDCKLVAAA AAATIMSLSF DTAAATELQA AAAASRATGS  60
SCLQLMSSYN YVDSSASCLH RSSCTSSSVP APFLTKTYFL VNDPSTDDIV SWGEDNTTFV  120
VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YGFRKIVPDR WEFANEFFRR GEKQLLCEIR  180
RRKSCLAGSA GNNNGSQQQS SHSPSVSNED LQTWSPLSSP LSSPRGRPAA LLQIQQPPPA  240
TPTSSSAHAA VFMCDENDRL RKDNNLLLSE VSRLRRLYDG TMVVLQQQQS SANSSSLQQD  300
LTRLRSIRGV AGGGTSTTMV SEAFGNCKLQ RDAGAPAFIA ELMDTAARKE QIRELSLQVM  360
MGGRNNIALE PASCCSAGLS ILHPTPAAGL SPSATDSTST RAGLLQVNMQ TRAHQSPATS  420
SCLAATPLPH QSWDSATPKA STLSFLDGKL REIESLRRSS SNCTGMITNT PTTAGAGNNN  480
IQVHITCATA EAEESTTTGE KSNTAPKLFG VPLRTEEEVT ASNSYSKADA TATVATAATT  540
DRKRTRSDQL QLQDSKDTTA RAKKLLQLLR PGAPPSPLVP AAAAAPSPLP SACTTVKPEL  600
GLELRPNMTT TATHVQLELA RPAWLQLCAA RINERVYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-248718224129Heat shock factor protein 1
5d5v_B2e-248718224129Heat shock factor protein 1
5d5v_D2e-248718224129Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-59heat shock transcription factor B4