PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0046s0055.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Nin-like

Protein Properties

Length: 1330aa MW: 144307 Da PI: 4.9436

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0046s0055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.7	2.2e-28	849	899	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ Sphfalx0046s0055.1.p 849 EKTIGLSVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKINKV 899 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.722	838	919	IPR003035	RWP-RK domain
Pfam	PF02042	9.3E-25	852	899	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-20	1217	1304	No hit	No description
PROSITE profile	PS51745	17.352	1221	1303	IPR000270	PB1 domain
SMART	SM00666	3.9E-11	1221	1303	IPR000270	PB1 domain
CDD	cd06407	4.56E-30	1222	1301	No hit	No description
Pfam	PF00564	4.4E-12	1222	1301	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.6E-19	1222	1301	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1330 aa Download sequence Send to blast
MDVSQVNERL QSCLPRWRSG DSCNMAAFGQ QQLSPAAGEA VQQRSSSTSG GDCKLEMDEC 60 DDTILCDLMD LDPLGEAGWI SGNEQSDFNV SYMNFASSFS ASAAGGLYPP CSSSSSSSNY 120 YYLQQALEEQ TCALLGQQEE ANSTAAAIVC SEEPSLPSPE FTDSFFNPGS SSRADSGNFS 180 QMLLLSPQQN LLMTDEEEAV PAEETKCCGT VMTTTRPSAR GVSSSCEEAR EVRLRPENFV 240 SNSSPLRVQC SERCGSGEKV EGAADGNLSG ERALAPAEAV RMTRSGSAAD MINYSRRYPI 300 VLTTEAPVSS LRHKLLQALR YVGRSRADAL AQVWMPIVTT QGVGNNKSCF LTTREQPYVL 360 ERKNDALWSF RSVSEEYDFP VVVVDEDEEA GTGRGLRADL PGRVFLSRTP EWSPNVQFYS 420 NDEYVRLKEA QRYDVRGTVA VPVLDPVSGR CLAVVELVMK SEKVQYLPEI DIICRALQAV 480 NLACSDGSKP AAAPEIRSQS RQAVLAEIEE VLTAVCETHK LPLAQTWVPA SQFGGSANVV 540 VQHNGSKRVR FEIDESCKNC CHMNTSMSIN NSMSLLTGDG PCYVSDGRMW GFRRACLEHT 600 IEKGQGVPGK AFSSNRPFFD KDVKSYSKLE YPIGHYAKWF GLSAAVAIRL RSIHTGSDDF 660 ILEFFLPPSC VESEEQQLML NTLSITMQRV CRSLRTVTDK ELEEEKEAAA QLAVDAEAEC 720 KALKLCEAKE EQDIDLSPGC GFGPPTPVMT HEVKSHFSSD QQQRQQRCCL QPSQHPLQYQ 780 QQSDEANDSS QHREPSQLQQ GQLSYQSDQL SLDVGAEVTN MGRESASSCS GQDVAIHRRR 840 LDRRRGMTEK TIGLSVLQQY FAGSLKDAAK SIGVCPTTLK RICRQHGITR WPSRKINKVS 900 RSLKKLQVVI DSVQGADGAL CINTLTGNIA SVAAAAATGI QIGKDCPPVQ GSWSCATCPS 960 IDHDCKEHLV TSNRPADFLT VPKEEDNKKP TVRNAEEDAL GEHVDEGNLM ASADGAADGL 1020 QERGVDRNSD PNSGGSLSSG CIGAAQGGPS LTPLSPGNDE ENVIGTVSHR PQSQPPPSTR 1080 KCGKNCCKLA VCKPPELMLP RSIRDGPGGN GSSNLKRQAN SEAGVESQVD SGSFALGALT 1140 GDPLLCDREE GQVSSSNYIF GEGSHNEEKE MTLHPHLCAL DSPQYASSQA HGISDCSSPS 1200 SGVVGISQKR IWPLICDTTS AITVKATAGT DTVRFKFPSG AGYLELREEV RCRLKVEGHS 1260 FDLKYLDDDE EWMLLACEAD LQECLEVTQA SQRHAIKLMV RCSTTSARSC MSSRTNSLVD 1320 EKPAKISSS*

Sequence ? help Back to Top

Protein Sequence Length: 1330 aa Download sequence Send to blast

MDVSQVNERL QSCLPRWRSG DSCNMAAFGQ QQLSPAAGEA VQQRSSSTSG GDCKLEMDEC  60
DDTILCDLMD LDPLGEAGWI SGNEQSDFNV SYMNFASSFS ASAAGGLYPP CSSSSSSSNY  120
YYLQQALEEQ TCALLGQQEE ANSTAAAIVC SEEPSLPSPE FTDSFFNPGS SSRADSGNFS  180
QMLLLSPQQN LLMTDEEEAV PAEETKCCGT VMTTTRPSAR GVSSSCEEAR EVRLRPENFV  240
SNSSPLRVQC SERCGSGEKV EGAADGNLSG ERALAPAEAV RMTRSGSAAD MINYSRRYPI  300
VLTTEAPVSS LRHKLLQALR YVGRSRADAL AQVWMPIVTT QGVGNNKSCF LTTREQPYVL  360
ERKNDALWSF RSVSEEYDFP VVVVDEDEEA GTGRGLRADL PGRVFLSRTP EWSPNVQFYS  420
NDEYVRLKEA QRYDVRGTVA VPVLDPVSGR CLAVVELVMK SEKVQYLPEI DIICRALQAV  480
NLACSDGSKP AAAPEIRSQS RQAVLAEIEE VLTAVCETHK LPLAQTWVPA SQFGGSANVV  540
VQHNGSKRVR FEIDESCKNC CHMNTSMSIN NSMSLLTGDG PCYVSDGRMW GFRRACLEHT  600
IEKGQGVPGK AFSSNRPFFD KDVKSYSKLE YPIGHYAKWF GLSAAVAIRL RSIHTGSDDF  660
ILEFFLPPSC VESEEQQLML NTLSITMQRV CRSLRTVTDK ELEEEKEAAA QLAVDAEAEC  720
KALKLCEAKE EQDIDLSPGC GFGPPTPVMT HEVKSHFSSD QQQRQQRCCL QPSQHPLQYQ  780
QQSDEANDSS QHREPSQLQQ GQLSYQSDQL SLDVGAEVTN MGRESASSCS GQDVAIHRRR  840
LDRRRGMTEK TIGLSVLQQY FAGSLKDAAK SIGVCPTTLK RICRQHGITR WPSRKINKVS  900
RSLKKLQVVI DSVQGADGAL CINTLTGNIA SVAAAAATGI QIGKDCPPVQ GSWSCATCPS  960
IDHDCKEHLV TSNRPADFLT VPKEEDNKKP TVRNAEEDAL GEHVDEGNLM ASADGAADGL  1020
QERGVDRNSD PNSGGSLSSG CIGAAQGGPS LTPLSPGNDE ENVIGTVSHR PQSQPPPSTR  1080
KCGKNCCKLA VCKPPELMLP RSIRDGPGGN GSSNLKRQAN SEAGVESQVD SGSFALGALT  1140
GDPLLCDREE GQVSSSNYIF GEGSHNEEKE MTLHPHLCAL DSPQYASSQA HGISDCSSPS  1200
SGVVGISQKR IWPLICDTTS AITVKATAGT DTVRFKFPSG AGYLELREEV RCRLKVEGHS  1260
FDLKYLDDDE EWMLLACEAD LQECLEVTQA SQRHAIKLMV RCSTTSARSC MSSRTNSLVD  1320
EKPAKISSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-85	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Sphfalx0046s0055.1.p