PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0047s0134.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C3H

Protein Properties

Length: 1199aa MW: 127032 Da PI: 7.3381

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0047s0134.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.7	4.6e-09	27	47	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr++a +GtC +Gd+C+FaH Sphfalx0047s0134.1.p 27 CRYWATSGTCFFGDQCNFAHN 47 ********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.051	21	49	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-4	22	48	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-6	25	50	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-7	27	50	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	27	46	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.474	59	88	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.5	61	87	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50011	10.153	787	1094	IPR000719	Protein kinase domain
CDD	cd00180	1.50E-7	797	945	No hit	No description
SuperFamily	SSF56112	5.43E-12	801	1017	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:3.30.200.20	8.4E-7	803	928	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1199 aa Download sequence Send to blast
MSVVCDSTHS VAMSASQTKL PASNITCRYW ATSGTCFFGD QCNFAHNAAD RAASGKSVPK 60 SEKACKELLL TGFCKKENNG CEYNHDIPGV TPSRAVSTSA PTANVSSNLA VSTSWTATAS 120 RAITTTTLSP GTAAAIRSKR LPVSAPAFVP AAVAAAQRAA LSAWGGVTPG GGKLLTTVNA 180 QATFTTPSAS VSSSPRQNGV LLSQSQATGG SDASSSTSLT LGKQESEVTV LSSEPPPPPA 240 AIVISSGLSS STLIPSVLNA QPFVPNSASA TVVNANGNVS LVGSTTAAPS TGTGNAAVLV 300 PSPSVASAVS AAPFVPKAKQ HLVAGGIGGG GVGLGVARPI VHGQQQQQPL MALTTPQQPQ 360 QQQQLQIRQH LSQLQQQMHQ QAAAAQVQAH MLSATARSMG SSGMSSNPYL SMDVPMVMPP 420 FRLPEGDDPA LGMTAMSPPN PAFLARVASN GGLPVLPAPD AMASMGIVGD GTGGLQLGNT 480 SSTSLSPPIN YSSGIASPQS SLMGTQQQLH HHVQRFQVQQ QHHSVSGGPV PQFPVRLPQK 540 VGGHTPEQQQ LQLLSTQAVE TGTGQAHEQA VPSSSASDSD QPSPPSSDTT SVQQSPQPRQ 600 QHSPQPQPQQ SPSTQQAAIK QQQQQIQQQQ QQLRQKLQQQ QQHLQQLQQQ RPQRSLSLQG 660 HQRLPSSGYM RSLSPVSGIA PVAAATHGGA TYFWGPGQGI GNVPHVLSSG SGFSVPGGRN 720 EPRIARGQSS SSAGTVPLGS RFLPEHLREE LRRRHALIHA QLDPEQDLVD LPEMVQGYHS 780 LFPLEDVNRE DDVPSTSFGV RTMIFKGISS SDGQAYAIRR IDSRQVIPTA ELATLAVEAV 840 ERWAPLSRHP HIVALRESLV SREVEDSAAL FFVHDYYPGA VTLEALHLQQ EQAGGVVHLT 900 VSEEQLWSYM VQLATVLRVV HGAGLFFRPG GLHPSKVLVP SRGRLRVSAV GILDVLHGDP 960 ADDPRVFQRE DLAGFGRLIL ALACGSVTNA SMEFMAPHYS ADLVRITQAL LASSPDKTEG 1020 VGISSIRQLY AVLAERMFGE IENVHLQNDE IMNELSKETE NGRLVRILVK LGMMNERPDD 1080 DMDPGWSETG DRYLLKLFRD FVFHQTTEEG TPLLDWGHVI ECLNKLDAGV PEKVILLSRD 1140 ERSMLIASYG DLKRCLEGVY QELVAKASGD KSRPSIAANL LAVSQAHAAA RLSQRQLA*

Sequence ? help Back to Top

Protein Sequence Length: 1199 aa Download sequence Send to blast

MSVVCDSTHS VAMSASQTKL PASNITCRYW ATSGTCFFGD QCNFAHNAAD RAASGKSVPK  60
SEKACKELLL TGFCKKENNG CEYNHDIPGV TPSRAVSTSA PTANVSSNLA VSTSWTATAS  120
RAITTTTLSP GTAAAIRSKR LPVSAPAFVP AAVAAAQRAA LSAWGGVTPG GGKLLTTVNA  180
QATFTTPSAS VSSSPRQNGV LLSQSQATGG SDASSSTSLT LGKQESEVTV LSSEPPPPPA  240
AIVISSGLSS STLIPSVLNA QPFVPNSASA TVVNANGNVS LVGSTTAAPS TGTGNAAVLV  300
PSPSVASAVS AAPFVPKAKQ HLVAGGIGGG GVGLGVARPI VHGQQQQQPL MALTTPQQPQ  360
QQQQLQIRQH LSQLQQQMHQ QAAAAQVQAH MLSATARSMG SSGMSSNPYL SMDVPMVMPP  420
FRLPEGDDPA LGMTAMSPPN PAFLARVASN GGLPVLPAPD AMASMGIVGD GTGGLQLGNT  480
SSTSLSPPIN YSSGIASPQS SLMGTQQQLH HHVQRFQVQQ QHHSVSGGPV PQFPVRLPQK  540
VGGHTPEQQQ LQLLSTQAVE TGTGQAHEQA VPSSSASDSD QPSPPSSDTT SVQQSPQPRQ  600
QHSPQPQPQQ SPSTQQAAIK QQQQQIQQQQ QQLRQKLQQQ QQHLQQLQQQ RPQRSLSLQG  660
HQRLPSSGYM RSLSPVSGIA PVAAATHGGA TYFWGPGQGI GNVPHVLSSG SGFSVPGGRN  720
EPRIARGQSS SSAGTVPLGS RFLPEHLREE LRRRHALIHA QLDPEQDLVD LPEMVQGYHS  780
LFPLEDVNRE DDVPSTSFGV RTMIFKGISS SDGQAYAIRR IDSRQVIPTA ELATLAVEAV  840
ERWAPLSRHP HIVALRESLV SREVEDSAAL FFVHDYYPGA VTLEALHLQQ EQAGGVVHLT  900
VSEEQLWSYM VQLATVLRVV HGAGLFFRPG GLHPSKVLVP SRGRLRVSAV GILDVLHGDP  960
ADDPRVFQRE DLAGFGRLIL ALACGSVTNA SMEFMAPHYS ADLVRITQAL LASSPDKTEG  1020
VGISSIRQLY AVLAERMFGE IENVHLQNDE IMNELSKETE NGRLVRILVK LGMMNERPDD  1080
DMDPGWSETG DRYLLKLFRD FVFHQTTEEG TPLLDWGHVI ECLNKLDAGV PEKVILLSRD  1140
ERSMLIASYG DLKRCLEGVY QELVAKASGD KSRPSIAANL LAVSQAHAAA RLSQRQLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4bwp_A	2e-74	743	1169	7	448	PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3
4bwp_B	2e-74	743	1169	7	448	PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XHW2	0.0	A0A2R6XHW2_MARPO; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Sphfalx0047s0134.1.p