PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0047s0153.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 874aa MW: 96390.1 Da PI: 4.8738

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0047s0153.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	454.2	8.3e-139	503	866	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 lv+lLl+cAeavs+++l+l ++lL++l elasp+g++mqR+aay+te+La r++r ++++y++lp +++ ++e+ +a++l+++ sP Sphfalx0047s0153.1.p 503 LVTLLLACAEAVSTKSLSLLNHLLQKLGELASPKGTSMQRIAAYYTEGLACRVTRLWPQIYQKLPFDINHT--EDETQTAFHLLNQFSP 589 6789**********************************************************9999985..666677999*** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 + kf+h+ta Il+a+eg++rvH+iDfd++qGlQWpaL+++La Rpegpp ++RiTgvg+ ke le tg+rLa+fAe+l++pf Sphfalx0047s0153.1.p 590 YTKFAHFTAIDIILQAFEGADRVHVIDFDVKQGLQWPALFHSLAVRPEGPPaHIRITGVGD----CKEDLEDTGDRLAEFAEALNIPFT 674 *******************************************88888*****....******************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 f++ v +rled++l++L+vk+ Ea+aVn+++qlhrll +s+++ + ++L+l+k+++P+vv +veqe +hns++F +rfle+l+yysa Sphfalx0047s0153.1.p 675 FHA-VIDRLEDVRLWMLHVKESEAVAVNCIMQLHRLLYDSGESIK---DFLSLLKTTRPRVVALVEQEGSHNSPNFEARFLESLQYYSA 759 .7*****************************99999888...9************************************ PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 +fdsl+a+lpr+s++r vE+ ++rei n++aceg er+erhet+++Wr +++a F++vp++++a +qa+ ll++++sdgy++ ee+ Sphfalx0047s0153.1.p 760 VFDSLDANLPRDSKARLQVEKL-FSREIHNILACEGLERVERHETFAQWRILMSQAKFSSVPVQKRAKAQAHILLHMFGSDGYTLSEED 847 ****************98.************************************************************** PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 g+l+lgW+d+pL+++SaW+ Sphfalx0047s0153.1.p 848 GTLTLGWMDQPLFTASAWT 866 ****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.489	477	846	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-136	503	866	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 874 aa Download sequence Send to blast
MFKGQWLDYS GIEFLEDEAI AAKVPCKGTH AAHNILSIQS LQESGLDGLS VSGQSPAAMQ 60 SLQAQLLFQQ LSYLLAEQQS AVTPAPTTPD MDMGDALASP ERVKYAQAHS ETIRHVTPED 120 ARQMSDHFNP MILRQAECTE VAAENLPVYL AASSKSCVDG RLTSIENRLA KISAALAAHV 180 QVPVLASNAP PCVTDDVGVP VKVSAKSYPT RSSATFENAI DCKGEVTHSD SPFNAKADLL 240 LVHKSSAATP VSMSATTAPN CKPVGGKPVA NFSSLHQWEA ATMASMQHKG LGKGFLERTI 300 LTQENNHPVF PSSWSFDTSE TDEALSIETL SELDEWEGAT TASTQHERPF KGCLQMTRFS 360 CEDDLAMPLP FQTFNGSDTA ETLSPEALSG LDEWEAATTA STQHERLAKQ WMKTLIEDLT 420 GQSRGEDSRS WKDTETCTPP FTPGAESSQK HPEQQHESEQ RSGSPFRSDC SREDNPASEY 480 LQEANPGKTW QGGQQSEEVG QELVTLLLAC AEAVSTKSLS LLNHLLQKLG ELASPKGTSM 540 QRIAAYYTEG LACRVTRLWP QIYQKLPFDI NHTEDETQTA FHLLNQFSPY TKFAHFTAID 600 IILQAFEGAD RVHVIDFDVK QGLQWPALFH SLAVRPEGPP AHIRITGVGD CKEDLEDTGD 660 RLAEFAEALN IPFTFHAVID RLEDVRLWML HVKESEAVAV NCIMQLHRLL YDSGESIKDF 720 LSLLKTTRPR VVALVEQEGS HNSPNFEARF LESLQYYSAV FDSLDANLPR DSKARLQVEK 780 LFSREIHNIL ACEGLERVER HETFAQWRIL MSQAKFSSVP VQKRAKAQAH ILLHMFGSDG 840 YTLSEEDGTL TLGWMDQPLF TASAWTPERI GVA*

Sequence ? help Back to Top

Protein Sequence Length: 874 aa Download sequence Send to blast

MFKGQWLDYS GIEFLEDEAI AAKVPCKGTH AAHNILSIQS LQESGLDGLS VSGQSPAAMQ  60
SLQAQLLFQQ LSYLLAEQQS AVTPAPTTPD MDMGDALASP ERVKYAQAHS ETIRHVTPED  120
ARQMSDHFNP MILRQAECTE VAAENLPVYL AASSKSCVDG RLTSIENRLA KISAALAAHV  180
QVPVLASNAP PCVTDDVGVP VKVSAKSYPT RSSATFENAI DCKGEVTHSD SPFNAKADLL  240
LVHKSSAATP VSMSATTAPN CKPVGGKPVA NFSSLHQWEA ATMASMQHKG LGKGFLERTI  300
LTQENNHPVF PSSWSFDTSE TDEALSIETL SELDEWEGAT TASTQHERPF KGCLQMTRFS  360
CEDDLAMPLP FQTFNGSDTA ETLSPEALSG LDEWEAATTA STQHERLAKQ WMKTLIEDLT  420
GQSRGEDSRS WKDTETCTPP FTPGAESSQK HPEQQHESEQ RSGSPFRSDC SREDNPASEY  480
LQEANPGKTW QGGQQSEEVG QELVTLLLAC AEAVSTKSLS LLNHLLQKLG ELASPKGTSM  540
QRIAAYYTEG LACRVTRLWP QIYQKLPFDI NHTEDETQTA FHLLNQFSPY TKFAHFTAID  600
IILQAFEGAD RVHVIDFDVK QGLQWPALFH SLAVRPEGPP AHIRITGVGD CKEDLEDTGD  660
RLAEFAEALN IPFTFHAVID RLEDVRLWML HVKESEAVAV NCIMQLHRLL YDSGESIKDF  720
LSLLKTTRPR VVALVEQEGS HNSPNFEARF LESLQYYSAV FDSLDANLPR DSKARLQVEK  780
LFSREIHNIL ACEGLERVER HETFAQWRIL MSQAKFSSVP VQKRAKAQAH ILLHMFGSDG  840
YTLSEEDGTL TLGWMDQPLF TASAWTPERI GVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-89	494	867	10	380	Protein SCARECROW
5b3h_A	3e-89	494	867	9	379	Protein SCARECROW
5b3h_D	3e-89	494	867	9	379	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024368133.1	0.0	protein DWARF AND LOW-TILLERING-like
Refseq	XP_024368135.1	0.0	protein DWARF AND LOW-TILLERING-like
TrEMBL	A0A2K1L2I1	0.0	A0A2K1L2I1_PHYPA; Uncharacterized protein
STRING	PP1S63_198V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-124	GRAS family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0047s0153.1.p