PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0048s0052.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 678aa    MW: 76716.3 Da    PI: 6.3021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0048s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.15.2e-1022966683374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPi 90 
                           elL++c ea+ ++dl++a++++ +l+el+sp+g+ +qR+a+y+t AL a++++++ +ly ++  +  s   + e l+++k    +  P+
  Sphfalx0048s0052.1.p 296 ELLFKCGEAIGQNDLKKATQIIVELRELSSPNGSGVQRMAHYVTDALVAKMSGTGAQLYTSIGNNIPS---TREMLQVYKSiIMDRLPY 381
                           79************************************************************666666...4556666665599***** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                            +++h+ +   Il+a++g +rvH++D++i +G++Wp+L+++La+Rpegpp+lRiTg+++p++g  s++++++tg+rL+kfA+++gvpfe
  Sphfalx0048s0052.1.p 382 ERLGHFFCTTRILDAFKGVTRVHVVDYGILYGFHWPCLIKELANRPEGPPHLRITGIDQPQPGctSSKRIQKTGQRLEKFARQCGVPFE 470
                           ****************************************************************9************************ PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           +++ +ak++e++++ eL++++gE+laVn+ ++l++ll+++v  +++++ +Lk +++++Pkv+v    +a++n++ F+ r+  ++++ys+
  Sphfalx0048s0052.1.p 471 YTA-IAKKWENITPYELALREGEVLAVNCLFRLEHLLNDHVVATNPQKLLLKKIRTMNPKVFVTGVVNANCNEPFFVSRLHATIKHYSV 558
                           ***.7************************************************************************************ PP

                  GRAS 267 lfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa..klllrkvksdgyrve 352
                            fd+l++ +p++  ++r+  E+e++grei n++aceg+ r+er e++++W++ ++++ Fk+ pl+   a+ +  +++l  ++++ + + 
  Sphfalx0048s0052.1.p 559 QFDTLDVVIPNDFeKNRVIFEKEVMGREILNIIACEGTTRVERSESYKQWHRCIQQSAFKQKPLGCPRAAHIvdESILGSYDKR-FGMG 646
                           **********99879999********************************************9996554443337888888866.**** PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                           +++g++++gWk++++ ++SaW+
  Sphfalx0048s0052.1.p 647 KDDGWFLMGWKNETVCAFSAWE 668
                           *********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.675268647IPR005202Transcription factor GRAS
PfamPF035141.8E-99296668IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAFCNKQSSL VGKEDLPPLV TKLQQAWLQS QLFKVQKNDP SPFSFSVRHK AQDQTDVEPT  60
DVEPLTHKLV FSHIIEKHIL PPLYSYSTKD SLKDYNLHNH GSFAHKAPTH VGDGNLGGDS  120
EPNMMTFLND ILMEEDIDYE PCMQIECTIV QAMENEFANL IREDSLSSTS GSKNFENNMV  180
HVGGVVNYNK TQNIEPSGCT QLFEQLFEDD LVHEYTDLLC QDVSQLNYCN NMDIITTRNP  240
QSMVSMHLAS NFSTSNRLNE HGDISMATSL PCGDDKGVQQ NVNFAFEFGD EDHLPELLFK  300
CGEAIGQNDL KKATQIIVEL RELSSPNGSG VQRMAHYVTD ALVAKMSGTG AQLYTSIGNN  360
IPSTREMLQV YKSIIMDRLP YERLGHFFCT TRILDAFKGV TRVHVVDYGI LYGFHWPCLI  420
KELANRPEGP PHLRITGIDQ PQPGCTSSKR IQKTGQRLEK FARQCGVPFE YTAIAKKWEN  480
ITPYELALRE GEVLAVNCLF RLEHLLNDHV VATNPQKLLL KKIRTMNPKV FVTGVVNANC  540
NEPFFVSRLH ATIKHYSVQF DTLDVVIPND FEKNRVIFEK EVMGREILNI IACEGTTRVE  600
RSESYKQWHR CIQQSAFKQK PLGCPRAAHI VDESILGSYD KRFGMGKDDG WFLMGWKNET  660
VCAFSAWEPV PLRATRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5030066925380Protein SCARECROW
5b3h_A3e-5030066924379Protein SCARECROW
5b3h_D3e-5030066924379Protein SCARECROW
Search in ModeBase
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-99SCARECROW-like 14