PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0048s0102.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 632aa    MW: 71058.6 Da    PI: 8.3089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0048s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-1032138398
                           EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE.......EEETTE........EEE-TTHHHHHHHH CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliy.....rkksgr........yvltkGWkeFvkan 72 
                           ++l +  v++  +l++pk f+e +     ++k  ++++l le  e g  W+v + +     +    r          ++kGW++F++ n
  Sphfalx0048s0102.1.p  32 TQLGKCAVGSPYQLYIPKYFVEYCarrnwELK--QNQKLLLEGyEIGFWWKVIVLVnrsspS----RgqesqilsARIGKGWRDFAQGN 114
                           5555666788889********66699988777..5668*****999********88544432....1445656666667********** PP

                           T--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  73 gLkegDfvvFkldgrsefelvvkvfr 98 
                            ++ gD v+F+l+++++f  vvk+f 
  Sphfalx0048s0102.1.p 115 AVEIGDKVLFTLVHTNRF--VVKFFH 138
                           *************98888..999986 PP
2B341.13.2e-13304404595
                           -..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE......EEETTE.....EEE-TTHHHHHHHHT--TT-EE CS
                    B3   5 ltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy....rkksgr.....yvltkGWkeFvkangLkegDfv 80 
                           l +s v     l +p +f++e+     +++++   + l d++++sWev  +     +++  +      +  kGW +F+ ++ L+egD +
  Sphfalx0048s0102.1.p 304 LRSSEVYHDFHLEMPAQFIREIklqlPSSSRR-SWVALLDRDNKSWEVLTRQvieqSGQ--QqnyclLLSPKGWARFALDHVLEEGDAC 389
                           6678888888999*********9977333334.48***************777754333..3466534445****************** PP

                           EEEE-SSSEE..EEE CS
                    B3  81 vFkldgrsefelvvk 95 
                           vF+l+++s + +v++
  Sphfalx0048s0102.1.p 390 VFELVSNSLELPVFR 404
                           ***998754444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1022141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1225142IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-1129137No hitNo description
PfamPF023622.7E-830138IPR003340B3 DNA binding domain
PROSITE profilePS5086311.49130140IPR003340B3 DNA binding domain
SMARTSM010199.2E-530140IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-14296409IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-13299409IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-14299409No hitNo description
PROSITE profilePS5086310.941300411IPR003340B3 DNA binding domain
SMARTSM010196.9E-6300411IPR003340B3 DNA binding domain
PfamPF023628.8E-12303403IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MGVRSCSDDE KFTPLEAAVK QASDDEVVFF VTQLGKCAVG SPYQLYIPKY FVEYCARRNW  60
ELKQNQKLLL EGYEIGFWWK VIVLVNRSSP SRGQESQILS ARIGKGWRDF AQGNAVEIGD  120
KVLFTLVHTN RFVVKFFHAD GRRKKKKKKQ GLTCLALGAV AKLSGKKSAA MSRKQQFDMM  180
MKDCKLSAAA TIQDQTRKMT MPRRKFFEIV DRSSDEEEEV EEEELGVPWV RRAVANARDQ  240
QQHTVVDKKI NPERLGDRQL IHAHEVKYMS KRPRDVTEEE RIKAIVAARA CAKDLPNISL  300
MLVLRSSEVY HDFHLEMPAQ FIREIKLQLP SSSRRSWVAL LDRDNKSWEV LTRQVIEQSG  360
QQQNYCLLLS PKGWARFALD HVLEEGDACV FELVSNSLEL PVFRVHIFRV LPMAVADSAN  420
IHSSVNPDQT SDHKILNMGT GANRSHDHEL GNKGECNCHC PETAAAGIKL PSTINTCSSL  480
VRNHPKPEPV LMEGGCCSKF NDGSTTTTTT TTTTTTTSGR WRTTTVGYTL GSLMQHNQSP  540
TAAAAPAPGS RSCCDQQAND LAAYAHCRTQ AHGDDEQHAY MQSKLFAAND HEQDHYEAQA  600
ASQRREKIAS ILQKPSTWRN PHYDTLLETF G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140149GRRKKKKKKQ
2141147RRKKKKK
3142148RKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-09related to vernalization1 1