PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0049s0012.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 224aa    MW: 23894.9 Da    PI: 8.131
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0049s0012.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.44.5e-42281281101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasn++k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq ++
  Sphfalx0049s0012.2.p  28 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKIFGASNISKMLMEVPESQRADAASSLVYEANARIRDPVYGCMGAISALQQQAQS 116
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkeel 101
                           l+ael+++++e+
  Sphfalx0049s0012.2.p 117 LQAELKAVRQEI 128
                           ********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.59527128IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4128125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSSSPLDRRA TLQGSREAGQ TVVNSSTPCA ACKLLRRRCA QECPFSPYFS PHEPQKFACV  60
HKIFGASNIS KMLMEVPESQ RADAASSLVY EANARIRDPV YGCMGAISAL QQQAQSLQAE  120
LKAVRQEIER YARHDNSALL ADATTAATAA MQMVSAAGAE YNHQAHNLHN RAGAAVVANP  180
LVSTQQTAAA AEVIYTVNPA ANTSVVATPD LKAERTSYWS ALN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-47181321115LOB family transfactor Ramosa2.1
5ly0_B9e-47181321115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362454.12e-68LOB domain-containing protein 15-like
RefseqXP_027162905.14e-68LOB domain-containing protein 15
SwissprotQ9AT617e-61LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A2K1IJC44e-67A0A2K1IJC4_PHYPA; Uncharacterized protein
STRINGPP1S156_26V6.16e-68(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.14e-58LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]