PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0050s0034.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 482aa    MW: 53419 Da    PI: 6.4652
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0050s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-162976148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT+ Ed +l++++  +G g+W+t ++  g+ R++k+c++rw +yl
  Sphfalx0050s0034.1.p 29 RGPWTQSEDHRLIQYISVHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 76
                          89******************************99************97 PP
2Myb_DNA-binding51.32.7e-1682127148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+ ++eEd l+ ++++ lG++ W+ Ia++m+ gRt++++k++w+++l
  Sphfalx0050s0034.1.p  82 RGNISEEEDRLITQLHAALGNR-WSIIAARMP-GRTDNEIKNYWNTHL 127
                           7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575118No hitNo description
PROSITE profilePS5129416.6282476IPR017930Myb domain
SuperFamilySSF466899.54E-2926123IPR009057Homeodomain-like
SMARTSM007172.0E-112878IPR001005SANT/Myb domain
PfamPF002495.1E-142976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-213083IPR009057Homeodomain-like
CDDcd001672.07E-83176No hitNo description
PROSITE profilePS5129426.88977131IPR017930Myb domain
SMARTSM007174.4E-1781129IPR001005SANT/Myb domain
PfamPF002491.5E-1482127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-2684131IPR009057Homeodomain-like
CDDcd001677.22E-1286127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAPKQASASS SSSSFSSCCS REQTAGLKRG PWTQSEDHRL IQYISVHGEG CWRTLPKAAG  60
LLRCGKSCRL RWINYLRPNL KRGNISEEED RLITQLHAAL GNRWSIIAAR MPGRTDNEIK  120
NYWNTHLKKK ISNNNNSSSS SSSNNNKISS IRRSSRSTTT ALHPSSASSS STHQELTKLQ  180
YQQSLKSPCH HQQFSMTTNL ISRNSNAATA QAAAAVLILP DDETDATVAA VDKSKDFHYC  240
NHHRHHHELL EAHCIHSSCP TKNPNLVSPL QAETTLSSTA QLQQAKNPNP NANDVNKKLN  300
DDDLLEVQCG ELAININPCR FRIPSVTENM KHMRQREEES VAANSQAATT TTTTTSSWCA  360
TVAAKENEVG KEEEEEDENL HCHITGEKTY DDYSCKQEET EFDCVAMPVS SHHDDNTFLQ  420
ILCSDAIIWD MDQTPLLPTQ IGDLFSTFSN TEPTTLDAST TCQLWDLDVI SSTTHHGESP  480
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-27271312105C-Myb DNA-Binding Domain
1msf_C2e-27271312105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-55myb domain protein 4