PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0050s0092.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 410aa    MW: 44480.7 Da    PI: 5.5051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0050s0092.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11341386655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+ ++P+     +k  + +e+L +AveYI+sLq
  Sphfalx0050s0092.1.p 341 SIAERVRRTRISERMKKLQGVVPNM----DKQTNTSEMLDEAVEYIRSLQ 386
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.354335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15338400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-11339390No hitNo description
Gene3DG3DSA:4.10.280.102.6E-15340399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8341386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12341391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MTRTRSITAD KTAMDAAPSD EKGLFLTVKS EVIDTDMKSD MSNFGVMLES PVQAFGNPSL  60
PPAPLVPSGL QRYHSAPSSF LHSLNDDAFL QVSSPLDISS NSRTSNSFIA PFFPEGLTAI  120
IEQMENEKLG TSGTNLNEEF DPYMDTARPD YGKRAALSAA MLQTGKPETN WQVPTEAFIP  180
DTFQSFFPAP KNNSPVQLSA AAMQEVNERS PTGMAIQSMM SSEESISGTS EDTNYGHGSK  240
TPMYSRDDSF LLSDTSVNLP TSPGSMSGKR HRDVPGGGAN TSGQIAESSI RSRPGVAGSL  300
TRHMSLPVGK TQMRPGVEDT SFLETVSGTR AKRGCATHPR SIAERVRRTR ISERMKKLQG  360
VVPNMDKQTN TSEMLDEAVE YIRSLQKKVQ ELTNIVVELR GQGYSRDDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.12e-30bHLH family protein