PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0050s0103.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 411aa    MW: 45542.3 Da    PI: 7.0435
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0050s0103.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.59.2e-52101411128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                           +p+GfrFhPtdeelv +yL kkv++k+++l + i+e+d+yk+ePwdL++      ++++++++yfFs++dkky+tg+r+nrat++g+Wk
  Sphfalx0050s0103.2.p  10 VPVGFRFHPTDEELVGYYLPKKVAAKPIDL-DLIRELDLYKLEPWDLQEqckipDANEKQTDYYFFSRKDKKYPTGNRANRATTAGFWK 97 
                           599***************************.99**************9536555445567789************************** PP

                   NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           atg+dk++ +k ++l+g++ktLvfy+grap+g+ktdW+mhe+rl
  Sphfalx0050s0103.2.p  98 ATGRDKAIWTKVQQLIGMRKTLVFYEGRAPHGNKTDWIMHEFRL 141
                           ******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-543163IPR003441NAC domain
PROSITE profilePS5100554.75910163IPR003441NAC domain
PfamPF023652.8E-2611141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSHSPPATRV PVGFRFHPTD EELVGYYLPK KVAAKPIDLD LIRELDLYKL EPWDLQEQCK  60
IPDANEKQTD YYFFSRKDKK YPTGNRANRA TTAGFWKATG RDKAIWTKVQ QLIGMRKTLV  120
FYEGRAPHGN KTDWIMHEFR LDDGPGMPAH DDGGWVVCRV FKKTKNFKMK TEERAVSYEG  180
QFGLMPEIMS SPEILSGGGG GAAASYHPGF GPNNNPSMVP SSAACKQEMN LDSSYNAVPA  240
AACHDSFNAL HLAQLAMQHK LESSCNHVAA AMPLMNSSGF HAGLVGRGRR DTMGFFSEQY  300
AALQETNHDS PGSCLFGPDA AARCNDNPEE GFLAYDDWGT LCDGKGGKDV FQRIPTTTRA  360
GADQSQQLAV AGVVDAPHQL RFQLKRQHSD HLFPSNCELD LWNFNQLCQK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-431016317165NO APICAL MERISTEM PROTEIN
1ut4_B9e-431016317165NO APICAL MERISTEM PROTEIN
1ut7_A9e-431016317165NO APICAL MERISTEM PROTEIN
1ut7_B9e-431016317165NO APICAL MERISTEM PROTEIN
3swm_A1e-421016320168NAC domain-containing protein 19
3swm_B1e-421016320168NAC domain-containing protein 19
3swm_C1e-421016320168NAC domain-containing protein 19
3swm_D1e-421016320168NAC domain-containing protein 19
3swp_A1e-421016320168NAC domain-containing protein 19
3swp_B1e-421016320168NAC domain-containing protein 19
3swp_C1e-421016320168NAC domain-containing protein 19
3swp_D1e-421016320168NAC domain-containing protein 19
4dul_A9e-431016317165NAC domain-containing protein 19
4dul_B9e-431016317165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392705.11e-114NAC domain-containing protein 30-like
RefseqXP_024392706.11e-114NAC domain-containing protein 30-like
RefseqXP_024392707.11e-114NAC domain-containing protein 30-like
RefseqXP_024392708.11e-114NAC domain-containing protein 30-like
TrEMBLX5IYJ71e-113X5IYJ7_PHYPA; NAC transcription factor PpVNS5
STRINGPP1S223_12V6.11e-114(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.17e-75vascular related NAC-domain protein 1