PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0051s0071.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 667aa MW: 73485.5 Da PI: 7.9358

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0051s0071.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	364.3	1.7e-111	288	656	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 +lLl+cA++v+++d ++a+ l+ +l++++s +g+ +qR+a yf+eALaarl++++ +ly+a+ ++ + + l+a++l+++ P+ Sphfalx0051s0071.1.p 288 ADLLLRCAKVVEQKDVRKANDLIGELRQHSSAYGNGVQRMAYYFVEALAARLSGTGGRLYAAICSNCPP---PAVLLKAYCLYVDNVPY 373 689*******************************************************999777776...6899********* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177 k+ l N +Il+a++g++ vH+iD++is+G+QW +L+q La+Rpeg+p+lRiTg+++p++g s+ ++ etg+rL++fA+ +vpfe Sphfalx0051s0071.1.p 374 TKMNRLFSNMTILDAFKGASNVHVIDYGISHGIQWQCLIQHLATRPEGSPHLRITGIDRPQPGfnSSARVLETGHRLTEFAKMWRVPFE 462 ***********************************************************9999******************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +++ ++++e++++ +L+++++E+laV++ +lh+lldesv es+r+ vL+ ++sl+Pkv+v a +n++ F+ rf e+++++s+ Sphfalx0051s0071.1.p 463 YHA-FCEKWENISTAQLALRHDEVLAVKCF-KLHYLLDESVMAESPRKIVLNRIRSLKPKVFVEGVVSAGYNAPFFMSRFRECVKHFST 549 .6********************95.6***************************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 +fds+e +lp+++ +r+ +E+e++g+ei n+vaceg er+er e +++W++r ++aGF++ pl+ ++++++k+++ ++++ + + e+ Sphfalx0051s0071.1.p 550 MFDSVEGSLPPDDPDRVLLEQECFGKEILNIVACEGLERVERAEPYRQWQSRTQRAGFTQRPLNPTIMSKMKAMMGSYPKE-FGIGEDG 637 ***************************************************************************55.*** PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 g+++ gWk++ ++ +S+W+ Sphfalx0051s0071.1.p 638 GWILTGWKNHIIYGLSSWE 656 ****************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.426	261	637	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.8E-109	288	656	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MQGSNNKSRG EFSSLATQLQ QAWLQSQIPK AAVQKHGGRL SSMIIPATAP QRRLGGSSPS 60 SSFLCPAQPV VDQGCLSSIV PGFATSHRHQ QKTTTVVVAE GVQKSPSSSS AAAFLERCDS 120 SSGFPERPLL PMLSSYSTKT SNFPARRAAV NNNSLEICDY DNSWIDEILG VPEKAQDRTF 180 ADDNGLLLMR DYTHGLGTAA SRGGGFTSVN THLSGNEMDS DSSEYMYEVL NATQYLEREA 240 QAPARIGGYG QSLPQLEQGG GMIPSGAKRW FQAVDGGGCG DLPRVDLADL LLRCAKVVEQ 300 KDVRKANDLI GELRQHSSAY GNGVQRMAYY FVEALAARLS GTGGRLYAAI CSNCPPPAVL 360 LKAYCLYVDN VPYTKMNRLF SNMTILDAFK GASNVHVIDY GISHGIQWQC LIQHLATRPE 420 GSPHLRITGI DRPQPGFNSS ARVLETGHRL TEFAKMWRVP FEYHAFCEKW ENISTAQLAL 480 RHDEVLAVKC FKLHYLLDES VMAESPRKIV LNRIRSLKPK VFVEGVVSAG YNAPFFMSRF 540 RECVKHFSTM FDSVEGSLPP DDPDRVLLEQ ECFGKEILNI VACEGLERVE RAEPYRQWQS 600 RTQRAGFTQR PLNPTIMSKM KAMMGSYPKE FGIGEDGGWI LTGWKNHIIY GLSSWEPNLV 660 ATTAIP*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MQGSNNKSRG EFSSLATQLQ QAWLQSQIPK AAVQKHGGRL SSMIIPATAP QRRLGGSSPS  60
SSFLCPAQPV VDQGCLSSIV PGFATSHRHQ QKTTTVVVAE GVQKSPSSSS AAAFLERCDS  120
SSGFPERPLL PMLSSYSTKT SNFPARRAAV NNNSLEICDY DNSWIDEILG VPEKAQDRTF  180
ADDNGLLLMR DYTHGLGTAA SRGGGFTSVN THLSGNEMDS DSSEYMYEVL NATQYLEREA  240
QAPARIGGYG QSLPQLEQGG GMIPSGAKRW FQAVDGGGCG DLPRVDLADL LLRCAKVVEQ  300
KDVRKANDLI GELRQHSSAY GNGVQRMAYY FVEALAARLS GTGGRLYAAI CSNCPPPAVL  360
LKAYCLYVDN VPYTKMNRLF SNMTILDAFK GASNVHVIDY GISHGIQWQC LIQHLATRPE  420
GSPHLRITGI DRPQPGFNSS ARVLETGHRL TEFAKMWRVP FEYHAFCEKW ENISTAQLAL  480
RHDEVLAVKC FKLHYLLDES VMAESPRKIV LNRIRSLKPK VFVEGVVSAG YNAPFFMSRF  540
RECVKHFSTM FDSVEGSLPP DDPDRVLLEQ ECFGKEILNI VACEGLERVE RAEPYRQWQS  600
RTQRAGFTQR PLNPTIMSKM KAMMGSYPKE FGIGEDGGWI LTGWKNHIIY GLSSWEPNLV  660
ATTAIP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-52	293	657	25	380	Protein SCARECROW
5b3h_A	8e-52	293	657	24	379	Protein SCARECROW
5b3h_D	8e-52	293	657	24	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403964.1	1e-171	scarecrow-like protein 33
TrEMBL	A0A2K1IYM3	1e-170	A0A2K1IYM3_PHYPA; Uncharacterized protein
TrEMBL	A9RPB2	1e-173	A9RPB2_PHYPA; Predicted protein
STRING	PP1S20_86V6.1	1e-171	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-119	GRAS family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0051s0071.1.p