PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0051s0099.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ZF-HD
Protein Properties Length: 330aa    MW: 34697.2 Da    PI: 8.2876
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0051s0099.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.56.7e-33101158460
           ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                            rY+eC+kNhAaslG+ha+DGCgEfm+s  ee g+++alkCaACgCHRnFHRreve e
  Sphfalx0051s0099.1.p 101 PRYRECQKNHAASLGSHALDGCGEFMSSAPEEeGSVDALKCAACGCHRNFHRREVEAE 158
                           69************************9988877*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-22102168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.8E-28102155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.5E-30102155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.206103154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.72E-19253327IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-30256328IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-25266322IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MPLLAMDLSS HAETDNSNPP VVTLSFAPPT TTVVHDSACT VKPKMQLNSG NNGTAAAAAA  60
MDHGIRALEI AAVNKTLQGS SGNNKDNNKQ LDKGDKFAKV PRYRECQKNH AASLGSHALD  120
GCGEFMSSAP EEEGSVDALK CAACGCHRNF HRREVEAEIL CDCHKSSKDS KMIKTLRAAT  180
FAQAPAAHHG LAAAQGMTAA AMAASYPSSL TQFHGKPINP LAMAMSTVAA AAADSDEQED  240
AGAGAGGIGG GGGGISSSPA STSMQKKRFR TKFSTEQKDE MCNFAEKLGW KMQKHDEAAV  300
QEFCATVGVK RHVLKVWMHN NKHTMAKKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-242673241875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402412.12e-78zinc-finger homeodomain protein 1-like
TrEMBLA9RDY79e-78A9RDY7_PHYPA; Predicted protein
STRINGPP1S3_539V6.17e-78(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.13e-26mini zinc finger 2